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Report for Sequence Feature Glyma.13G003800

Feature Type:gene_model
Chromosome:Gm13
Start:1066482
stop:1070077
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13G003800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17980.1AT C2 calcium/lipid-binding plant phosphoribosyltransferase family protein JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR10024Panther SYNAPTOTAGMIN JGI N/AIEA
PTHR10024:SF97Panther SYNAPTOTAGMIN-7 JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF08372PFAM Plant phosphoribosyltransferase C-terminal JGI N/AIEA
PF11696PFAM Protein of unknown function (DUF3292) JGI N/AIEA

Proteins Associated with Glyma.13G003800
LocusGene SymbolProtein Name
C2-125 C2 domain containing protein gene 125

Expression Patterns of Glyma.13G003800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13G003800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g003800 Wm82.a4.v1ISS As supplied by JGI
Glyma13g10720 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13G003800
>Glyma.13g003800.1 sequence-type=CDS polypeptide=Glyma.13g003800.1.p locus=Glyma.13g003800 ID=Glyma.13g003800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAGTGTTCGAAAACTGATCGTGGAGGTAGTGGACGCTCACAACCTCGTCCCTAAGGACGGCCACGGAACCTCCAGCCCCTACGTGGTGGTCGACTTCCACGGCCAGCGGAGGAAGACGCGGACCGCGGTCCGTGACTTGAACCCGGTCTGGAAAGAAACGCTGTCGTTTAATGTAGACAATGTTAACTCCCAGTCGTCTCAAATCTTCGGCGACACGCTCGAGCTCGACGTTTACCACGACAAGTCCTACGGCTCCACCCGCAGACACAACTCCCTCGGCCGAATCCGCCTCAGCTCCGCCCAGTTCGTCAACAAAGGCGAGGAGGCTTTGGTGTACTACGTCCTGGAGAAGAAGTACCTTCTCAGCATGATCCAAGGTGAAATCGGTTTGAAAATCTACTACGTCGACGAGGAGAAGGTTCTTAAAATAGAGGAAGCACCGCCGCCCCCACCACCACCGCAGAAGGAAGCAGAGATTACTGAACCGGAGAAAGTGGAAGAAACACCTCCACCACAACCACCAGAAGGTGAGAAACCTAAAGAAGAAGAAATGAAGGAAAAAGAGAAAGAAAACGCTGAACCTCCTCCTCCTCCAGCTCCAGCTGCTGCAACTGAAAAACCACCACCTGAAGCTGAACAGGATTATCAACCGTTGGATCCGTTGTTAGATGTGAAGGCAGCGTCTGTGTCGAGGTCGAATTCGGAAATAAGATTCAACGGAACCAATAACGGTCCTGCACCTCCTCAACCAATGAGAAGGTCTGCATCAACGGCGAGTTTTGCAGCATCAGAGGCGTCGAGTGAAACTAGCAGCATGATGACGATGATGGAACGGTCGTCGTTTGATCTTGTGGAGAAGATGCACTACCTCTTCGTCCACGTCGTCAAAGCCCGCTACTTACCCACCAACGGAAACCCCGTCGTCAAAATCGCCGTTTCGGGGCAGCACCACGTCACGTCCATGCCCGCGCGCAAGTCCACCGTGTTATTCGAATGGAATCAGACCTTCGCATTCGCACGCGACGCACCTGATTCCTCCTCCGTGCTGGAGGTCTCTGCGTGGGACCCCCAAGCTTCCGAGGCTCTGCTCGGTGGTGTGTGCTTTGACGTCAACGAGATTCCCGTGCGGGACCCACCGGACAGCCCTCTGGCCCCACAGTGGTACAGATTGGAAGGCGGAGGGGCCCTCCACGGCGACCTCATGATCGCCACGTGGATGGGAACGCAAGCCGACGAATCATTTCCCGACGCGTGGAAGAGTGACACGTTTGCTCATGTGAACTCCAGAGCCAAAGTTTACCAGTCACCGAAACTGTGGTACCTGAGAGCCACTCTTCTCGAAGCTCAAGACGTTTTTCTTCTGCCATTAACCTCATCCAAGGAATCGTGTTTTCGAGTAAAGGCCAAACTCGGATTCCAGGTGCTGAAATCCAAAACGGTGGTTACTCGTAACGGCACCGTTTCATGGAACAACGAAGACTTCATTTTTGTGGTGGCAGAGCCCGTGAGCGACCACCTCATGTTCACTTTAGAAAACCGACAACCTGACGCGCCGGTGACAATTGGAGTCCTCAGAATACCTTTACTCGCTATTGAGAGAAGGGTCGATGACCGGAGCGTGGCGTCGCGGTGGTTCACCTTCGATAACGAGAGCGACGACAAAGCAAGCAGCAGGCCCAGGGTGCACCTGCGGTTATGCTTCGACGGCGGGTATCACGTGATGGACGAGGCGGCTCACGTTTGCAGCGACTACCGCCCCACGGCAAGGCAGCTCTGGAAGCCACCGGTTGGCACGGTCGAGCTCGGCATCATTGGCTGCAAGAACCTGCTACCGATGAAGACGGTGAACGGTAAGAGCTCCATGGACGCGTACTGCGTGGCCAAGTACGGTAGCAAGTGGGTTCGCACGAGAACCGTTTCGGATAACATGGAACCCAAGTGGAATGAACAGTACACGTGGAAGGTTTACGATCCTTCCACCGTTCTCACCATCGGAGTATTCGACAGCTCCCTCCTCGACATGGATAATGACAAAAATACCCTCATAGGAAAAGTACGCGTGCGTATCTCCACGCTGCATACAGGGAGAGTGTATAAAAACACTTACCCGTTGTTGGTGCTGAGTCCGGTTTCGGGGCTGAAGAAAATGGGGGAGATTGAGATAGCGATAAGGTTCGTTCGGACGACTCAACGGCTAGATTTCCTCCACGTGTACTCGCAGCCGATGCTGCCGTTGATGCACCATGTCAAGCCGCTGGGGGTGGTGCAGCAGGAGGCGCTGCGGAACACCACGGTGAGGATGGTGGCGGGACACCTGTCCAGGGCAGAACCGCCGCTGAGGAAGGAGGTGGTGTTCTACATGCTGGACGCGGACTCACACAACTTCAGCATGAGGAAAGTGCGCGCCAACTGGTATAGGATCATAAACGTCATCGCGGCCGTGGTAGATATTGTACGGTGGATAGAGCACACGCGGGGATGGAGGAATCCAACCGCAACCATATTGGTGCACGCGCTGTTAGTGATGTTGGTGTGGTTCCCTGATTTAATCATTCCCACGTTCTGTTTCTACGTTTTTGCTGTAGGTGCGTGGAACTACAGGTTTAGGGCGCGTGACCCACTTCCGCATTTCGACCCCAAGATATCTTTGGCAGAGGTTGTGGATAGGGAGGAGCTTGATGAGGAGTTTGACACTGTGCCCAGTAACAAAGCGAGTGAGGTGGTGCGAGTGCGGTATGACAGGTTGAGGGCGCTGGGGGCGCGCGTGCAGACGGTGCTGGGGGATTTGGCGACGCAAGGGGAGCGCGTCCAGGCGCTGGTGACGTGGCGGGACCCACGCGCCACGGGAATATTTGTGTTCTTGTGCTTGACTGTGGCGTTCATGCTGTATCTTGTGCCTTCAAAGATGGTGGCGATGGCTTTCGGGTTTTACTATCTCAGGCACCCTATCTTCCGTGATCGCCTGCCCTCGCCGGCGCTGAACTTCTTCAGAAGGTTGCCTTCATTGTCTGATCGAATCATGTAG
Predicted protein sequences of Glyma.13G003800
>Glyma.13g003800.1.p sequence-type=predicted peptide transcript=Glyma.13g003800.1 locus=Glyma.13g003800 ID=Glyma.13g003800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSVRKLIVEVVDAHNLVPKDGHGTSSPYVVVDFHGQRRKTRTAVRDLNPVWKETLSFNVDNVNSQSSQIFGDTLELDVYHDKSYGSTRRHNSLGRIRLSSAQFVNKGEEALVYYVLEKKYLLSMIQGEIGLKIYYVDEEKVLKIEEAPPPPPPPQKEAEITEPEKVEETPPPQPPEGEKPKEEEMKEKEKENAEPPPPPAPAAATEKPPPEAEQDYQPLDPLLDVKAASVSRSNSEIRFNGTNNGPAPPQPMRRSASTASFAASEASSETSSMMTMMERSSFDLVEKMHYLFVHVVKARYLPTNGNPVVKIAVSGQHHVTSMPARKSTVLFEWNQTFAFARDAPDSSSVLEVSAWDPQASEALLGGVCFDVNEIPVRDPPDSPLAPQWYRLEGGGALHGDLMIATWMGTQADESFPDAWKSDTFAHVNSRAKVYQSPKLWYLRATLLEAQDVFLLPLTSSKESCFRVKAKLGFQVLKSKTVVTRNGTVSWNNEDFIFVVAEPVSDHLMFTLENRQPDAPVTIGVLRIPLLAIERRVDDRSVASRWFTFDNESDDKASSRPRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGIIGCKNLLPMKTVNGKSSMDAYCVAKYGSKWVRTRTVSDNMEPKWNEQYTWKVYDPSTVLTIGVFDSSLLDMDNDKNTLIGKVRVRISTLHTGRVYKNTYPLLVLSPVSGLKKMGEIEIAIRFVRTTQRLDFLHVYSQPMLPLMHHVKPLGVVQQEALRNTTVRMVAGHLSRAEPPLRKEVVFYMLDADSHNFSMRKVRANWYRIINVIAAVVDIVRWIEHTRGWRNPTATILVHALLVMLVWFPDLIIPTFCFYVFAVGAWNYRFRARDPLPHFDPKISLAEVVDREELDEEFDTVPSNKASEVVRVRYDRLRALGARVQTVLGDLATQGERVQALVTWRDPRATGIFVFLCLTVAFMLYLVPSKMVAMAFGFYYLRHPIFRDRLPSPALNFFRRLPSLSDRIM*






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