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Report for Sequence Feature Glyma.12g238700

Feature Type:gene_model
Chromosome:Gm12
Start:39783084
stop:39787404
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g238700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42280.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0001046GO-mf core promoter sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001228GO-mf transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR10985Panther BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED JGI N/AIEA
PTHR10985:SF42Panther JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.12g238700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g238700
ParalogEvidenceComments
Glyma.13g204400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g238700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g36750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g238700
>Glyma.12g238700.2 sequence-type=transcript locus=Glyma.12g238700 ID=Glyma.12g238700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGATTTATGGTCCCAAAAGCTACTCCTGCTATGGCAGGAACAGAGGTCAAGAAATAGTGTTTCTCATTCTGTTAGAGTGACACTTTTCTATTTCTGACCCTTTGTCAGGTTTTGCTGTTTTAAACTTTGTTGAGGACAGAATTTGCATTTCTCTTTGAAATTTTGGTCTTAAATTTTTTAGGCTATCCTGGTCACCAAGGTGATTGTGAAGATAAGATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCAAGGGGAAACAAGGATGAACCCAGAAATGGATTCAAACATTGGTCAACATTGTCACCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGCGaacaacaacaacattaataataacaccaccaccaaTGGTTGTGTTAATGGCAAAGCTTTCAGAAGTGTGCATAATCATCATCAGCAGCAACGTTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCAAACAATTCTGAGCCTTTGCAAGTGAAGGAAGAAGCAGTGGCCTCTGTTTCACAGCCACCACAACAGCACAATGGTTACTCCTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATGCCAAATGGTTCTTTAGGGAATGCTTTTGATGGCTCATTCAGTGCAGTGAATTCCCTTGCTTCACAGAATTCCACACAACCTAGACTGGGTGCTTCCACCAATTGCAACAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTACTCAGTTGATAATGCAATGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCAAGTGGGTTGCATGGTGGTACTTTGAACTTATCATCTAGGCCATCCTCTTGCTCCACCCGAATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGGAAATTATGTTGAAAGTAGAAACCTGAGAAATGATAATATCAACAGCACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTTCATTCAGTCCCAGAACAGCTAGTAACAATGGTGAAATCTCATTTTCCACTTCAAATGCTATGGATATTCAGGGTGAAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTCGAGTCTGCCTGGCTCTTCTAGTAGGGTGGCTACAATGGAGAAGTTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCCAAGAGAGGTTTTGCCACTCATCCGAGAAGCATTGCAGAGAGGGAAAGAAGAACTCGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAAACAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTTAGAGATACTAGGGCAAAGTGCACTTGTACAAGCAATCAGAAGCACTGATTTATATCCTTGTAGATATAAAAAAGAAGGAGCATTTTTTTTCTTTTTATGTATTTATCCTTTGGTGTACCAAAATTTTGGGTCAGTGTGATTATGTAGAGTAGTGCTGATATTTGCAAGTATCTAAGAATTTAGGTCCAGGCCCGAGTGAATCTCTTCAGtttttttttttttttttcattctccctcatttgtttttctttctttcctttgcttGATTTAAGGATCATAATATACTAGCAAGTTTAGAAAGAGTCAATTGTAACTGTTCATTTTACTCATAAGAGGTTTGATGGCATTACAAAATGAATGTGTCCTGAGAACTGTCACACGCTAAAGATTGAGTACATTAAGCGGTATAAGATCTTTGTATTCGTGTTGCATATATAGGGGGTTTCCTTATTAGGAGTGCA
Coding sequences of Glyma.12g238700
>Glyma.12g238700.1 sequence-type=CDS polypeptide=Glyma.12g238700.1.p locus=Glyma.12g238700 ID=Glyma.12g238700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCAAGGGGAAACAAGGATGAACCCAGAAATGGATTCAAACATTGGTCAACATTGTCACCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGCGAACAACAACAACATTAATAATAACACCACCACCAATGGTTGTGTTAATGGCAAAGCTTTCAGAAGTGTGCATAATCATCATCAGCAGCAACGTTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCAAACAATTCTGAGCCTTTGCAAGTGAAGGAAGAAGCAGTGGCCTCTGTTTCACAGCCACCACAACAGCACAATGGTTACTCCTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATGCCAAATGGTTCTTTAGGGAATGCTTTTGATGGCTCATTCAGTGCAGTGAATTCCCTTGCTTCACAGAATTCCACACAACCTAGACTGGGTGCTTCCACCAATTGCAACAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTACTCAGTTGATAATGCAATGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCAAGTGGGTTGCATGGTGGTACTTTGAACTTATCATCTAGGCCATCCTCTTGCTCCACCCGAATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGGAAATTATGTTGAAAGTAGAAACCTGAGAAATGATAATATCAACAGCACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTTCATTCAGTCCCAGAACAGCTAGTAACAATGGTGAAATCTCATTTTCCACTTCAAATGCTATGGATATTCAGGGTGAAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTCGAGTCTGCCTGGCTCTTCTAGTAGGGTGGCTACAATGGAGAAGTTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCCAAGAGAGGTTTTGCCACTCATCCGAGAAGCATTGCAGAGAGGGAAAGAAGAACTCGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAAACAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTTAGAGATACTAGGGCAAAGTGCACTTGTACAAGCAATCAGAAGCACTGA

>Glyma.12g238700.2 sequence-type=CDS polypeptide=Glyma.12g238700.2.p locus=Glyma.12g238700 ID=Glyma.12g238700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCAAGGGGAAACAAGGATGAACCCAGAAATGGATTCAAACATTGGTCAACATTGTCACCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGCGAACAACAACAACATTAATAATAACACCACCACCAATGGTTGTGTTAATGGCAAAGCTTTCAGAAGTGTGCATAATCATCATCAGCAGCAACGTTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCAAACAATTCTGAGCCTTTGCAAGTGAAGGAAGAAGCAGTGGCCTCTGTTTCACAGCCACCACAACAGCACAATGGTTACTCCTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATGCCAAATGGTTCTTTAGGGAATGCTTTTGATGGCTCATTCAGTGCAGTGAATTCCCTTGCTTCACAGAATTCCACACAACCTAGACTGGGTGCTTCCACCAATTGCAACAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTACTCAGTTGATAATGCAATGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCAAGTGGGTTGCATGGTGGTACTTTGAACTTATCATCTAGGCCATCCTCTTGCTCCACCCGAATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGGAAATTATGTTGAAAGTAGAAACCTGAGAAATGATAATATCAACAGCACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTTCATTCAGTCCCAGAACAGCTAGTAACAATGGTGAAATCTCATTTTCCACTTCAAATGCTATGGATATTCAGGGTGAAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTCGAGTCTGCCTGGCTCTTCTAGTAGGGTGGCTACAATGGAGAAGTTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCCAAGAGAGGTTTTGCCACTCATCCGAGAAGCATTGCAGAGAGGGAAAGAAGAACTCGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAAACAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTTAGAGATACTAGGGCAAAGTGCACTTGTACAAGCAATCAGAAGCACTGA
Predicted protein sequences of Glyma.12g238700
>Glyma.12g238700.1.p sequence-type=predicted peptide transcript=Glyma.12g238700.1 locus=Glyma.12g238700 ID=Glyma.12g238700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIVYSHAVKYSQGETRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLANNNNINNNTTTNGCVNGKAFRSVHNHHQQQRYPPSTSSEMETMLAKLISSNNSEPLQVKEEAVASVSQPPQQHNGYSYGSSPQMMYQTQQIQGLPMPNGSLGNAFDGSFSAVNSLASQNSTQPRLGASTNCNNLIRQKSSPAGFFSNYSVDNAMRDVASFRGCDVSNGQAITSSSGLHGGTLNLSSRPSSCSTRMPQIAENGNEGVEGNYVESRNLRNDNINSTKCYMPSFTTDFWDGSSFSPRTASNNGEISFSTSNAMDIQGEDFGYQKVGLTHHSSLPGSSSRVATMEKFYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKTDKQTSTADMLDLAVEYIKDLQKQVKMLRDTRAKCTCTSNQKH*

>Glyma.12g238700.2.p sequence-type=predicted peptide transcript=Glyma.12g238700.2 locus=Glyma.12g238700 ID=Glyma.12g238700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIVYSHAVKYSQGETRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLANNNNINNNTTTNGCVNGKAFRSVHNHHQQQRYPPSTSSEMETMLAKLISSNNSEPLQVKEEAVASVSQPPQQHNGYSYGSSPQMMYQTQQIQGLPMPNGSLGNAFDGSFSAVNSLASQNSTQPRLGASTNCNNLIRQKSSPAGFFSNYSVDNAMRDVASFRGCDVSNGQAITSSSGLHGGTLNLSSRPSSCSTRMPQIAENGNEGVEGNYVESRNLRNDNINSTKCYMPSFTTDFWDGSSFSPRTASNNGEISFSTSNAMDIQGEDFGYQKVGLTHHSSLPGSSSRVATMEKFYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKTDKQTSTADMLDLAVEYIKDLQKQVKMLRDTRAKCTCTSNQKH*






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