SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45400.1 | AT | NAD(P)-binding Rossmann-fold superfamily protein | JGI | N/A | IEA |
| KOG1502 | KOG | Flavonol reductase/cinnamoyl-CoA reductase | JGI | N/A | IEA |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | N/A | IEA |
| PTHR10366:SF9 | Panther | JGI | N/A | IEA | |
| PWY-2055 | SoyCyc9 | superpathway of pterocarpan biosynthesis (via daidzein) | Plant Metabolic Network | ISS | |
| PWY-2229 | SoyCyc9 | superpathway of pterocarpan biosynthesis (via formononetin) | Plant Metabolic Network | ISS | |
| PWY-2463 | SoyCyc9 | (-)-medicarpin biosynthesis | Plant Metabolic Network | ISS | |
| PWY-2464 | SoyCyc9 | (-)-maackiain biosynthesis | Plant Metabolic Network | ISS | |
| PWY-2761 | SoyCyc9 | (-)-glycinol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5717 | SoyCyc9 | superpathway of formononetin derivative biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-42133 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.12g237900 not represented in the dataset |
Glyma.12g237900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g36670 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g237900.1 sequence-type=CDS polypeptide=Glyma.12g237900.1.p locus=Glyma.12g237900 ID=Glyma.12g237900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCACTTCACCATCATCAATGACTAAGATTGAACACAGTCACGCCATTTTATTCAGTCCCTGTGAAACGCACGAACATTCTCGATCTCAAGAACACAGGAAAGATGTTAGCTTTCTTACCAGCTTACCTGGATCATCCCAAAGGCTACAAATTCTCAGTGCTGATCTCAGCAATCCCGAAAGCATTGGAGTTTTCCATGTTGCTACCCCAGTTGACTTTCAAGTAAAGGAACCTGAGGAAACATGCCTCAATTCCAAGACTGTGAAGAGAGTTGTTTACACTACTAGCGTTGGTGCTGTGGTTTGCAACAGCGAAGAAGACCAAGTGATGGATGAAAGCTTTTGGAGTGATGTAGATTATCTTAGATCTTCAAAGATATTGAAATGGTCTTATGCAGTCTCAAAGACATCGACAGAAAAGAATGGATTGGATGTTGTGACGATAGCTCCACCTTTGGTTCTTGGACCCTTCATTTGTCCTAAGCTTCCAGACTCAATTTCTGATGCACTGAATCTTAGCATTTGGCTGAGTGCTTGTGCTTGTGCTTGCTTCAACTCAAATAATACGAGAATTGAGAAATGCCAGAAGGCAATATTGGTTGAAATTTATGTGGAACGTGACAAAGATCCATTAGCTTTCAATGATCGGATTATGGTGCATGTGGAAGATGTGGTTAGAGTGCATATATTTCTGCTTGAACATCCTGATCCAAAAGGGAGGTACATATGTTCTTCATATAATACACCTGTTGAAAGGGTATATCAATTTGTTTCTGCCAAATACCCAGAGGTTCAACAACGAACAACAGATGCTTTAAAACAAAATAAAGGTATCAGGATACCAGATTTATCGGCAAAGAAGCTGATAGATGCTGGATTCAAGTTCAAGTATGGACCTGAGGAAATGCTTGATGATACAGTTCAATGCTGCAAAGAAAAG
>Glyma.12g237900.1.p sequence-type=predicted peptide transcript=Glyma.12g237900.1 locus=Glyma.12g237900 ID=Glyma.12g237900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATSPSSMTKIEHSHAILFSPCETHEHSRSQEHRKDVSFLTSLPGSSQRLQILSADLSNPESIGVFHVATPVDFQVKEPEETCLNSKTVKRVVYTTSVGAVVCNSEEDQVMDESFWSDVDYLRSSKILKWSYAVSKTSTEKNGLDVVTIAPPLVLGPFICPKLPDSISDALNLSIWLSACACACFNSNNTRIEKCQKAILVEIYVERDKDPLAFNDRIMVHVEDVVRVHIFLLEHPDPKGRYICSSYNTPVERVYQFVSAKYPEVQQRTTDALKQNKGIRIPDLSAKKLIDAGFKFKYGPEEMLDDTVQCCKEK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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