Glyma.12g234300

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Report for Sequence Feature Glyma.12g234300

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39378718
stop:	39382347
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g234300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78570.1	AT	rhamnose biosynthesis 1	JGI	N/A	IEA
GO:0006694	GO-bp	steroid biosynthetic process	JGI	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0009225	GO-bp	nucleotide-sugar metabolic process	EnsemblGenomes	N/A	IEA
GO:0044237	GO-bp	cellular metabolic process	JGI	N/A	IEA
GO:0045226	GO-bp	extracellular polysaccharide biosynthetic process	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0003854	GO-mf	3-beta-hydroxy-delta5-steroid dehydrogenase activity	JGI	N/A	IEA
GO:0008460	GO-mf	dTDP-glucose 4,6-dehydratase activity	EnsemblGenomes	N/A	IEA
GO:0008831	GO-mf	dTDP-4-dehydrorhamnose reductase activity	JGI	N/A	IEA
GO:0016616	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	JGI	N/A	IEA
GO:0050662	GO-mf	coenzyme binding	JGI	N/A	IEA
KOG0747	KOG	Putative NAD+-dependent epimerases	JGI	N/A	IEA
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI	N/A	IEA
PTHR10366:SF2	Panther		JGI	N/A	IEA
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI	N/A	IEA
PF04321	PFAM	RmlD substrate binding domain	JGI	N/A	IEA
PWY-3261	SoyCyc9	UDP-β-L-rhamnose biosynthesis	Plant Metabolic Network		ISS
GN7V-58243	SoyCyc9-rxn	UDP-glucose 4,6-dehydratase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.12g234300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g234300 not represented in the dataset	Glyma.12g234300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g234300

Paralog	Evidence	Comments
Glyma.13g264500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g234300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g36290	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g234300

Limit To All Plant Sequences

>Glyma.12g234300.2 sequence-type=transcript locus=Glyma.12g234300 ID=Glyma.12g234300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGTCTATATATATACAGAGAAAGTGTGTAGAGTCCAAATCTAAATCTGAGAACTACCATTTTCCATTTCTTCTGTGTCTGAAAAATttctctttcttgtcttcgtgttttctccttcttcttcgcttcatcGCTTGCCAATTCTTGCTTGACATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAAAAGTATTGAGCGGTTTCATGTTTTAGAAATCAAAGATTATGCATTTTTGTTGCGGGCTACATAGATCACTCTTTATTTCATTGTTATTTCGTTGGGTTTTGATAAGAACCTTACTAGAAAAGCTAGCCATGTAGTTCTTGTTCTCATAGCTACAAGTGATTCCAGTTTCAGCATAGTTCCATCATGTTACTGTGTTTAGAGGGTGACAAGTATAATAATTGGGCCAGATATGGTTCCTAAGTTAACATTTCTGTAGCTTTATTCTAGTTTGTAGCGTCCTCTGTTAAGAGCAGCCTTAGAAAATAGGGTCTTGTTACCTAAAAGCTTTTGCATCCTGGAAGGCATGTATTCTTTTTATTGCTCATATATTATATCCTTTTTGTGGGGTATTCAGTTATACTTTTATCGTATTTGCATTGTACAATATGCAGTGAAATGGATGGTGCTACTGAGATATTCATTT

Coding sequences of Glyma.12g234300

Limit To All Plant Sequences

>Glyma.12g234300.1 sequence-type=CDS polypeptide=Glyma.12g234300.1.p locus=Glyma.12g234300 ID=Glyma.12g234300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA

>Glyma.12g234300.2 sequence-type=CDS polypeptide=Glyma.12g234300.2.p locus=Glyma.12g234300 ID=Glyma.12g234300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA

Predicted protein sequences of Glyma.12g234300

Limit To All Plant Sequences

>Glyma.12g234300.1.p sequence-type=predicted peptide transcript=Glyma.12g234300.1 locus=Glyma.12g234300 ID=Glyma.12g234300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDPETSIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPPSYVSTNTRMVVPTSKNVNSSQKPALKFLLYGRTGWIGGLLGKLCEKQEIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGILMINYATGCIFEYDKAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWTNFNLEEQAKVIIAPRSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKTA*

>Glyma.12g234300.2.p sequence-type=predicted peptide transcript=Glyma.12g234300.2 locus=Glyma.12g234300 ID=Glyma.12g234300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDPETSIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPPSYVSTNTRMVVPTSKNVNSSQKPALKFLLYGRTGWIGGLLGKLCEKQEIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGILMINYATGCIFEYDKAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWTNFNLEEQAKVIIAPRSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKTA*

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