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Report for Sequence Feature Glyma.12g231500

Feature Type:gene_model
Chromosome:Gm12
Start:39151416
stop:39156034
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g231500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78700.1AT BES1/BZR1 homolog 4 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0009742GO-bp brassinosteroid mediated signaling pathway EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
PF05687PFAM Plant protein of unknown function (DUF822) JGI N/AIEA

Proteins Associated with Glyma.12g231500
LocusGene SymbolProtein Name
BES1-12 protein BRI1-EMS-SUPPRESSOR 1

Expression Patterns of Glyma.12g231500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g231500
ParalogEvidenceComments
Glyma.13g266500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g231500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g36060 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g231500
>Glyma.12g231500.1 sequence-type=CDS polypeptide=Glyma.12g231500.1.p locus=Glyma.12g231500 ID=Glyma.12g231500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGTCGGGGACGAGGCTACCCACGTGGAAGGAGAGAGAGAACAACAAGAAGAGAGAGAGGAGAAGAAGAGCCATAGCGGCGAAGATCTTCGCGGGTCTGAGGATGTATGGGAACTTCAAACTCCCAAAACACTGCGACAACAATGAAGTCCTCAAAGCTCTCTGCAACAAAGCTGGTTGGACCGTTGAACCCGATGGAACCACTTACCGCAAGGGATGCAAGCCTTCAGAGGGCATGGAGATAGTTGGTGGATCATCAGCAGCAGCAAGCCCTTGCTCATCTTACCATCCAAGTCCATGTGCTTCCTACAATCCAAGCCCTGGCTCATCATCCCCTTACTACACCCAAATTCCCAATCCTGATGGCAACTCCCTCATTCCATGGCTCAAGAACCTCTCCACTGCTTCATCTTCAGCATCCTCTCCCAAGCTTCCCCACCTCTACCTCCACAGTGGCTCCATCAGTGCTCCTGTGACGCCTCCTCTGAGCTCTCCAACCGCCAGAACGCCACGAATCAATGCTGAGTGGGACGAGCAGTCTGCGCGGCCGGGGCCCGGATGGACCAGACAGCAGCACTACTCATTCCTGCCATCTTCTAGTCCTCCCAGCCCCGGCCGCCAGGTTGTTGACCCTGAATGGTTTGCTGGGATCAAGCTTCCTCATGTTAGTCCAACCTCACCAACATTCAGCTTGGTCTCCTCAAACCCTTTTGCCTTCAAGGAACATGCTTTGCCCTCCAGCGGTTCGCCAATGTGGACTCCGGCTCAGAGTGGAACATGCTCTCCTGCTGTTCCACCGGGTTCTTATCAGAATGCTGACATTCCTATGTCTGATGCCGTTTCGGATGAATTTGCATTTGGAAGCAACGTGTTGGGGCTTGTCAAGCCTTGGGAAGGAGAAAGGATCCATGAGGAATTTGGATCAGATGATCTTGAACTCACACTTGGTAACTCAAAGACCAGATGA
Predicted protein sequences of Glyma.12g231500
>Glyma.12g231500.1.p sequence-type=predicted peptide transcript=Glyma.12g231500.1 locus=Glyma.12g231500 ID=Glyma.12g231500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSGTRLPTWKERENNKKRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNKAGWTVEPDGTTYRKGCKPSEGMEIVGGSSAAASPCSSYHPSPCASYNPSPGSSSPYYTQIPNPDGNSLIPWLKNLSTASSSASSPKLPHLYLHSGSISAPVTPPLSSPTARTPRINAEWDEQSARPGPGWTRQQHYSFLPSSSPPSPGRQVVDPEWFAGIKLPHVSPTSPTFSLVSSNPFAFKEHALPSSGSPMWTPAQSGTCSPAVPPGSYQNADIPMSDAVSDEFAFGSNVLGLVKPWEGERIHEEFGSDDLELTLGNSKTR*






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