Glyma.12g231400

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Report for Sequence Feature Glyma.12g231400

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39138374
stop:	39142508
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g231400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78700.1	AT	BES1/BZR1 homolog 4	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0009742	GO-bp	brassinosteroid mediated signaling pathway	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
PF05687	PFAM	Plant protein of unknown function (DUF822)	JGI	N/A	IEA

Proteins Associated with Glyma.12g231400

Locus	Gene Symbol	Protein Name
	BES1-10	protein BRI1-EMS-SUPPRESSOR 1

Expression Patterns of Glyma.12g231400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g231400

Paralog	Evidence	Comments
Glyma.13g266600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g231400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g36050	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g231400

Limit To All Plant Sequences

>Glyma.12g231400.2 sequence-type=transcript locus=Glyma.12g231400 ID=Glyma.12g231400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGATTTAGTTGTGAATTGAACTGAATCTATGTTTTGATGTGCAATTTGAGAAATTTGGCTTGATTTTTTTATGAATTTGGATTTTTTTACTGAATTTGCTAGTTTTTTTTTTTAATGTGGATTGTTTTTGGTGGCGTGTATATACGGTGTCGTTTTGGTTTAGTTTAATGGCATGGCACATGCTACTGTTGGTGGTGGGAATCAAAAGGACGTGAAAGGCGCAGGGAGTTACGGAAAGAGTGATGCTGTCTGATTCtattattattattattattaaaattattGCTGCtgtgtgtgttgtgtgaaatgtgaatgtgtgttgtctttttggttgtgaattgtgtgtgtggtgtgGGGGGGTTAGATCTGCGTTTTTTACTTTGGGGCGTGAAAAGATTCTCTGTATCTCCGTGGTGGTGTTTTGATGAGTCATAATGATAATCCTCGAGAGAAACCTCAGGGGGGGCATAGATCTCGAGGGGGAGAAAAAAAAGAGAAAGAAAATGGCCGTTATTATGGTTTTGGGGGGTAATGGGCAATGGAATTGCCAAAAGTTTCTTAGCTGGGCCTGGAATGCCGGAATTCTGGGAATTGGTAGGGGTAAATGGGTAATTTCGTGTGTTTTTAGGTGTCTGCTTGTTGTGCTTGTTGTTGTAACATGACAGAAGCTTTTGCAGACATTGCGGTGTACTCTCTGATCTGGAGGGGATGCAAGCCTCCTGTTGAACGCATGGACATAGTAGGTGGTTCTGCAGCAGCAAGCCCGTGCTCATCTTACCATCCAAGTCCTTGTGCTTCCTACAACCCTAGTCCAGGCTCTTCTTGCTTACCGAGCCCTCGTGCATCCCCCTATCCTCCAAACCACAATGCTGATGGAAATTCTCTCATTCCATGGCTCAAAAACCTTtcatcaggatcatcatcagcatcctcttcCAAGCTTCCGCAGCTGTACATTCCAAACGGCTCCATCAGCGCTCCTGTCACTCCTCCAATCAGCTCTCCATCGTCTCGAAAGCCCCGAATCAACGCTGACTGGGAGGATCTGTCCACTCGTCCGGCAGCGTGGGGCGGACCTGCATACACCTTCCTGCCCTCTTCAACTCCTCCTAGCCCCGGTCGCCAGGTTGCTGAAACAGATTGGTTTTCCAAGATCAGGATTCCTCAGGTAGGACTAACACCAACTTCTCCAACCTTCAGCCTGGTCTCTTCCAACCCATTTGGCTTCAAGGAAGATGCTATGGGTGGCAGCGGTTCCCGCATGTGGACGACACCAGGGGCAAGTGGAACATGTTCTCCAGCTGTAGCTGCAGGCTCTGAAAACACTTCTGACATTCCAATGGCTGAAGCAGTTTCAGATGAATTTGCCTTTGGAAGCAGCTCATCAGTTTTAGTGAATGCCTGGAAAGGGGAGAGGATCCATGAAGCTTCTTTCGGAACAGATGATCTTGAGCTCACTCTTGGGAGCTCAAAAACCAGGCTACTCCATAAGTGAATAGTCAATGGTCCCTTCAACGACAAGAACTTTGACTCTGTTTATTCTGTAGAAAAGGCTAGAGGAGGGAATTAAGATGAGCAGCAAGTAGTTGCTCTTTACATACCAGAAAAAAATAGCAGtttattttattcttttattttctcttaggttttattGGTTCCTAAGTTATATATACAGCCTTAGCTAGGTCTCGGGTGGTTTTCAACCATTTCATGTGGTCAATGTCTTGTTAAAACTTTTAATACTCTGGGAAAGATCATATACATGTATGGATTGGCTTGGTTTGATATTGAAAGGGAAAAATTACTCGATTTCAACTGTAACTGAATGATCAAGAAAGTTATGCAAATTCCAACTGAATGGGCCTACAAAATATCTCTTCTCTCACTT

Coding sequences of Glyma.12g231400

Limit To All Plant Sequences

>Glyma.12g231400.1 sequence-type=CDS polypeptide=Glyma.12g231400.1.p locus=Glyma.12g231400 ID=Glyma.12g231400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGTCCGGCGCGAGGCAGCCGACGTGGAAGGAGCGGGAGAACAACAAGAGGCGGGAGAGGCGGAGGAGAGCTATCGCGGCGAAGATCTTCTCCGGCCTCAGAATGTACGGAAACTACAAGCTCCCGAAGCACTGCGACAACAACGAAGTTCTCAAGGCTCTCTGCAACGAAGCCGGCTGGACCGTCGAAGCCGACGGCACCACCTATCGCAAGGGATGCAAGCCTCCTGTTGAACGCATGGACATAGTAGGTGGTTCTGCAGCAGCAAGCCCGTGCTCATCTTACCATCCAAGTCCTTGTGCTTCCTACAACCCTAGTCCAGGCTCTTCTTGCTTACCGAGCCCTCGTGCATCCCCCTATCCTCCAAACCACAATGCTGATGGAAATTCTCTCATTCCATGGCTCAAAAACCTTTCATCAGGATCATCATCAGCATCCTCTTCCAAGCTTCCGCAGCTGTACATTCCAAACGGCTCCATCAGCGCTCCTGTCACTCCTCCAATCAGCTCTCCATCGTCTCGAAAGCCCCGAATCAACGCTGACTGGGAGGATCTGTCCACTCGTCCGGCAGCGTGGGGCGGACCTGCATACACCTTCCTGCCCTCTTCAACTCCTCCTAGCCCCGGTCGCCAGGTTGCTGAAACAGATTGGTTTTCCAAGATCAGGATTCCTCAGGTAGGACTAACACCAACTTCTCCAACCTTCAGCCTGGTCTCTTCCAACCCATTTGGCTTCAAGGAAGATGCTATGGGTGGCAGCGGTTCCCGCATGTGGACGACACCAGGGGCAAGTGGAACATGTTCTCCAGCTGTAGCTGCAGGCTCTGAAAACACTTCTGACATTCCAATGGCTGAAGCAGTTTCAGATGAATTTGCCTTTGGAAGCAGCTCATCAGTTTTAGTGAATGCCTGGAAAGGGGAGAGGATCCATGAAGCTTCTTTCGGAACAGATGATCTTGAGCTCACTCTTGGGAGCTCAAAAACCAGGCTACTCCATAAGTGA

>Glyma.12g231400.2 sequence-type=CDS polypeptide=Glyma.12g231400.2.p locus=Glyma.12g231400 ID=Glyma.12g231400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGAAGCTTTTGCAGACATTGCGGTGTACTCTCTGATCTGGAGGGGATGCAAGCCTCCTGTTGAACGCATGGACATAGTAGGTGGTTCTGCAGCAGCAAGCCCGTGCTCATCTTACCATCCAAGTCCTTGTGCTTCCTACAACCCTAGTCCAGGCTCTTCTTGCTTACCGAGCCCTCGTGCATCCCCCTATCCTCCAAACCACAATGCTGATGGAAATTCTCTCATTCCATGGCTCAAAAACCTTTCATCAGGATCATCATCAGCATCCTCTTCCAAGCTTCCGCAGCTGTACATTCCAAACGGCTCCATCAGCGCTCCTGTCACTCCTCCAATCAGCTCTCCATCGTCTCGAAAGCCCCGAATCAACGCTGACTGGGAGGATCTGTCCACTCGTCCGGCAGCGTGGGGCGGACCTGCATACACCTTCCTGCCCTCTTCAACTCCTCCTAGCCCCGGTCGCCAGGTTGCTGAAACAGATTGGTTTTCCAAGATCAGGATTCCTCAGGTAGGACTAACACCAACTTCTCCAACCTTCAGCCTGGTCTCTTCCAACCCATTTGGCTTCAAGGAAGATGCTATGGGTGGCAGCGGTTCCCGCATGTGGACGACACCAGGGGCAAGTGGAACATGTTCTCCAGCTGTAGCTGCAGGCTCTGAAAACACTTCTGACATTCCAATGGCTGAAGCAGTTTCAGATGAATTTGCCTTTGGAAGCAGCTCATCAGTTTTAGTGAATGCCTGGAAAGGGGAGAGGATCCATGAAGCTTCTTTCGGAACAGATGATCTTGAGCTCACTCTTGGGAGCTCAAAAACCAGGCTACTCCATAAGTGA

Predicted protein sequences of Glyma.12g231400

Limit To All Plant Sequences

>Glyma.12g231400.1.p sequence-type=predicted peptide transcript=Glyma.12g231400.1 locus=Glyma.12g231400 ID=Glyma.12g231400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSGARQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEADGTTYRKGCKPPVERMDIVGGSAAASPCSSYHPSPCASYNPSPGSSCLPSPRASPYPPNHNADGNSLIPWLKNLSSGSSSASSSKLPQLYIPNGSISAPVTPPISSPSSRKPRINADWEDLSTRPAAWGGPAYTFLPSSTPPSPGRQVAETDWFSKIRIPQVGLTPTSPTFSLVSSNPFGFKEDAMGGSGSRMWTTPGASGTCSPAVAAGSENTSDIPMAEAVSDEFAFGSSSSVLVNAWKGERIHEASFGTDDLELTLGSSKTRLLHK*

>Glyma.12g231400.2.p sequence-type=predicted peptide transcript=Glyma.12g231400.2 locus=Glyma.12g231400 ID=Glyma.12g231400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEAFADIAVYSLIWRGCKPPVERMDIVGGSAAASPCSSYHPSPCASYNPSPGSSCLPSPRASPYPPNHNADGNSLIPWLKNLSSGSSSASSSKLPQLYIPNGSISAPVTPPISSPSSRKPRINADWEDLSTRPAAWGGPAYTFLPSSTPPSPGRQVAETDWFSKIRIPQVGLTPTSPTFSLVSSNPFGFKEDAMGGSGSRMWTTPGASGTCSPAVAAGSENTSDIPMAEAVSDEFAFGSSSSVLVNAWKGERIHEASFGTDDLELTLGSSKTRLLHK*

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