Report for Sequence Feature Glyma.12g229200
Feature Type: gene_model
Chromosome: Gm12
Start: 38919217
stop: 38923409
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.12g229200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G42590.2 AT
general regulatory factor 9
JGI N/A IEA
GO:0019904 GO-mf
protein domain specific binding
EnsemblGenomes N/A IEA
KOG0841
KOG
Multifunctional chaperone (14-3-3 family)
JGI N/A IEA
PTHR18860 Panther
14-3-3 PROTEIN
JGI N/A IEA
PF00244 PFAM
14-3-3 protein
JGI N/A IEA
Proteins Associated with Glyma.12g229200
Locus Gene Symbol Protein Name
SGF14n 14-3-3 protein SGF14n
GF14o GF14 gene family gene o
Expression Patterns of Glyma.12g229200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.12g229200
Paralog Evidence Comments
Glyma.13g270600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.12g229200 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma12g35820 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.12g229200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.12g229200.2 sequence-type=transcript locus=Glyma.12g229200 ID=Glyma.12g229200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAAAACAAAAAAAAGCCGCATCTACCTTTCACTTCACTTGTGGTTTTTCACTCTCTCTGTCTCTCACCACACCACACTGAGGAGGGAGATAGTGGAAGGAACACTCAAATGACTCAACCAGCCATGGCTACCTTCTCCAAGGAACGCGAGAACTTTGTCTATGTTGCCAAGTTAGCTGAACAAGCTGAACGCTATGATGAGTGTTGAGTGGAGTGGTGCGGTGTGCAGAAATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAATTGAGTGTGGAAGAGAGGAACCTGTTCTCTGTTGGGTACAAGAATGTGGTGGGGTCACGGAGAGCTTCATGGAGGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGCATGTTAAGCGTATCAGGGATTACAGGAACAAGGTGGAGTTGGAGCTGTCCAACATTTGCAGTGACATTATGATAGTTTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCACGGTGTTTTATTATAAGATGAAAGGAGACTATTACCGGTATTTGGCAGAATTCAAGGCTGGTAATGAAAAGAAAGAGGTGGCAGATCAGTCACTTAAAGCATATGAGACAGCTTCTACCACTGCTGAGAGTGAACTACAACCTACACATCCTATTCGTTTGGGTCTGGCTCTAAATTTCTCTGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCAAAGCAAGCCTTTGATGATGCTGTCTCAGACCTGGATACCCTGAATGAGGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGAGGGATAACCTTACTTTATGGACTTCTGATATCCCCGAAGAGGGTGAGGACCAAAAAATGGAAAGCACAACCAGGGGAGAAGATGAGTTAGGCCGCTAGCCCATCGTTTTGTCGTATATCTAAGATTTGATGCATTAATTTTTCTCACAAGTATATTTGCCCCATTGTGGTGAAACCTCTATTTGAATGGTGCACTGCACCTCGTCAACTTCGACTCATTGTTATTTTTGAGTGATGGCCTATTTGAATCATCTTCATTTTTATGTTATTGTTGAGTAGTTTTATTCATGTGTTTGTGACAAAAACAACATTGGCTTGCAATGCATAATTTCACTGTTTGTATCCTGTTATGGTTAAGATCAGTTTGTGGGTTAGCATTTCAAGAACTGATCATATATGAGCCAACTCTAATATTGC
Coding sequences of Glyma.12g229200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.12g229200.1 sequence-type=CDS polypeptide=Glyma.12g229200.1.p locus=Glyma.12g229200 ID=Glyma.12g229200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTCAACCAGCCATGGCTACCTTCTCCAAGGAACGCGAGAACTTTGTCTATGTTGCCAAGTTAGCTGAACAAGCTGAACGCTATGATGAAATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAATTGAGTGTGGAAGAGAGGAACCTGTTCTCTGTTGGGTACAAGAATGTGGTGGGGTCACGGAGAGCTTCATGGAGGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGCATGTTAAGCGTATCAGGGATTACAGGAACAAGGTGGAGTTGGAGCTGTCCAACATTTGCAGTGACATTATGATAGTTTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCACGGTGTTTTATTATAAGATGAAAGGAGACTATTACCGGTATTTGGCAGAATTCAAGGCTGGTAATGAAAAGAAAGAGGTGGCAGATCAGTCACTTAAAGCATATGAGACAGCTTCTACCACTGCTGAGAGTGAACTACAACCTACACATCCTATTCGTTTGGGTCTGGCTCTAAATTTCTCTGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCAAAGCAAGCCTTTGATGATGCTGTCTCAGACCTGGATACCCTGAATGAGGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGAGGGATAACCTTACTTTATGGACTTCTGATATCCCCGAAGAGGGTGAGGACCAAAAAATGGAAAGCACAACCAGGGGAGAAGATGAGTTAGGCCGCTAG
>Glyma.12g229200.2 sequence-type=CDS polypeptide=Glyma.12g229200.2.p locus=Glyma.12g229200 ID=Glyma.12g229200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAATTGAGTGTGGAAGAGAGGAACCTGTTCTCTGTTGGGTACAAGAATGTGGTGGGGTCACGGAGAGCTTCATGGAGGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGCATGTTAAGCGTATCAGGGATTACAGGAACAAGGTGGAGTTGGAGCTGTCCAACATTTGCAGTGACATTATGATAGTTTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCACGGTGTTTTATTATAAGATGAAAGGAGACTATTACCGGTATTTGGCAGAATTCAAGGCTGGTAATGAAAAGAAAGAGGTGGCAGATCAGTCACTTAAAGCATATGAGACAGCTTCTACCACTGCTGAGAGTGAACTACAACCTACACATCCTATTCGTTTGGGTCTGGCTCTAAATTTCTCTGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCAAAGCAAGCCTTTGATGATGCTGTCTCAGACCTGGATACCCTGAATGAGGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGAGGGATAACCTTACTTTATGGACTTCTGATATCCCCGAAGAGGGTGAGGACCAAAAAATGGAAAGCACAACCAGGGGAGAAGATGAGTTAGGCCGCTAG
Predicted protein sequences of Glyma.12g229200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.12g229200.1.p sequence-type=predicted peptide transcript=Glyma.12g229200.1 locus=Glyma.12g229200 ID=Glyma.12g229200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTQPAMATFSKERENFVYVAKLAEQAERYDEMVDAMKKVAKLDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNELHVKRIRDYRNKVELELSNICSDIMIVLDEHLIPSTNIAESTVFYYKMKGDYYRYLAEFKAGNEKKEVADQSLKAYETASTTAESELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDAVSDLDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEEGEDQKMESTTRGEDELGR*
>Glyma.12g229200.2.p sequence-type=predicted peptide transcript=Glyma.12g229200.2 locus=Glyma.12g229200 ID=Glyma.12g229200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVDAMKKVAKLDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNELHVKRIRDYRNKVELELSNICSDIMIVLDEHLIPSTNIAESTVFYYKMKGDYYRYLAEFKAGNEKKEVADQSLKAYETASTTAESELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDAVSDLDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEEGEDQKMESTTRGEDELGR*