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Report for Sequence Feature Glyma.12g226400

Feature Type:gene_model
Chromosome:Gm12
Start:38612856
stop:38615910
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g226400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57850.1AT D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
KOG0975 KOG Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily JGI N/AIEA
PTHR11825Panther SUBGROUP IIII AMINOTRANSFERASE JGI N/AIEA
PTHR11825:SF6Panther JGI N/AIEA
PF01063PFAM Aminotransferase class IV JGI N/AIEA
PWY-6543SoyCyc9 4-aminobenzoate biosynthesis Plant Metabolic Network ISS
GN7V-53933SoyCyc9-rxn aminodeoxychorismate lyase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g226400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g226400 not represented in the dataset
Glyma.12g226400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g226400
ParalogEvidenceComments
Glyma.13g274400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g226400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g35520 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g226400
>Glyma.12g226400.2 sequence-type=transcript locus=Glyma.12g226400 ID=Glyma.12g226400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCATCGCTACTTTTAATGACTCAACCACTTCACTGGAACAAGTGAAGAAGCAAACACAACAAAGTTCAATCGTCTcaaacaaaaagaacaagaaaacaaacacacaaacagacaaacaaTAATTTAAATTGTTCTCTGGTGTTCTTGCTATTAATTAATAGTAATTTCCACTGCTCCAGTTCCAAATATATATACTTACTAGTTTCCTACACACTCCTTAATTACTATTTTTCACTTTCTCCTTTCAATATGAGGAACCCCACTCACAAGTCCCCTGAGGTTGAAAATGATGGTGATTTTAAAGTTCATCTGTTCTCTTCATCATCCGAGATACCTCTATGAGTTGGATGTTCACCTTGACAGATTCCTAAGTTCAGCCTCCAAAGCAAAGATATCCTCTCCCTTTTCTCGATCAGTGCTTCACAGCATTCTAATACAACTAACTGCAGCATCAAAATGCAAGAAGGGAACTCTAAGATACTGGCTCAGTGCAGGTCCTGGAGATTTCTTGCTATCATCAGCAGGATGTCCAACATCTGCATTCTATGCAGTAGTCATTGACCAAGATATTTCCCAATGCAAAGAGGGAGTTAAAGTGATTACTTCCAACATACCAATGAAGCCTTCTCTATTTGCCACAGCCAAAAATGTGAACTATCTTCCAAATGTCCTTTCAGTAATGGAAGCTGAAGAGAAAGGAGCATCTTCTTCTATATGGGTTGATGAGGAAGGTTATATTGCTGAAGGTCCAAATGTGAATGTTGCTTTCATAACTCAAGACAAGGAACTTGTCATGCCTCCTTTTGATAACATCTTACATGGTTGCACTGCAAAAAGGCTCCTTGAACTGGCACCCAAGTTGGTTGATCAAGGGCTTCTGAAAGGTGTAGCAACTAAAAAACTAACTGTGGAGGAAGCTAAAGCTGCTGCTGAAATGATGTATGTAGGAAGCACGCTTCCTCTGTTGCCTATCATCGTCTGGGATGATCAACCCATTGGCAATGGAAGGGTGGGAGAATTAACAATGTTACTTTCGGATATGCTTTGGGATGATATGGTAGCTGGCCCTGGCACACAGAGGATACCTGTTCCTTATGTTGAGTAAACCTACAAAGTCATCAAATTACAGGCTGGGAACAACTTTCTTACTTTTCTATGTCATGTTCCTAGGAGTTCTCCTTGCAAAGATTTATCAAGAGGTTTCTCTTTGTATTTGCTTTTTGTATTTCAAGTGTGAACACTGAACAAGTCCTTAAGTGAAGCACCAGGTGTTTCCTGCAACACAAAATTTACGTAGCAGATAAATAGTCCTTGAACTGTTTCACGTTGTTGTATTGATATAATAATAATAATGAAGACTCTTCATGCTGCTTTGTGCCAGAACCAGAACCACTTGACTTTGATTTTT

>Glyma.12g226400.3 sequence-type=transcript locus=Glyma.12g226400 ID=Glyma.12g226400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCATCGCTACTTTTAATGACTCAACCACTTCACTGGAACAAGTGAAGAAGCAAACACAACAAAGTTCAATCGTCTcaaacaaaaagaacaagaaaacaaacacacaaacagacaaacaaTAATTTAAATTGTTCTCTGGTGTTCTTGCTATTAATTAATAGTAATTTCCACTGCTCCAGTTCCAAATATATATACTTACTAGTTTCCTACACACTCCTTAATTACTATTTTTCACTTTCTCCTTTCAATATGAGGAACCCCACTCACAAGTCCCCTGAGGTTGAAAATGATGGTGATTTTAAAGTTCATCTGTTCTCTTCATCATCCGAGTTGCTTGAAAAGCTTCATGAAAAATGGAGTTCAGTGGAGAAACCACCATACCCAGCTATGTATTCTAGTATTTATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCCATTGATGATCACATGGTTCACAGAGGGCATGGTGTGTTTGATACAGCTATTGTTCTAGATGGATACCTCTATGAGTTGGATGTTCACCTTGACAGATTCCTAAGTTCAGCCTCCAAAGCAAAGATATCCTCTCCCTTTTCTCGATCAGTGCTTCACAGCATTCTAATACAACTAACTGCAGCATCAAAATGCAAGAAGGGAACTCTAAGATACTGGCTCAGTGCAGGTCCTGGAGATTTCTTGCTATCATCAGCAGGATGTCCAACATCTGCATTCTATGCAGTAGTCATTGACCAAGATATTTCCCAATGCAAAGAGGGAGTTAAAGTGATTACTTCCAACATACCAATGAAGCCTTCTCTATTTGCCACAGCCAAAAATGTGAACTATCTTCCAAATGTCCTTTCAGTAATGGAAGCTGAAGAGAAAGGAGCATCTTCTTCTATATGGGTTGATGAGGAAGGTTATATTGCTGAAGGTCCAAATGTGAATGTTGCTTTCATAACTCAAGACAAGGAACTTGTCATGCCTCCTTTTGATAACATCTTACATGGTTGCACTGCAAAAAGGCTCCTTGAACTGGCACCCAAGTTGGTTGATCAAGGGCTTCTGAAAGGTGTAGCAACTAAAAAACTAACTGTGGAGGAAGCTAAAGCTGCTGCTGAAATGATGTATGTAGGAAGCACGCTTCCTCTGTTGCCTATCATCGTCTGGGATGATCAACCCATTGGCAATGGGTGGGAGAATTAACAATGTTACTTTCGGATATGCTTTGGGATGATATGGTAGCTGGCCCTGGCACACAGAGGATACCTGTTCCTTATGTTGAGTAAACCTACAAAGTCATCAAATTACAGGCTGGGAACAACTTTCTTACTTTTCTATGTCATGTTCCTAGGAGTTCTCCTTGCAAAGATTTATCAAGAGGTTTCTCTTTGTATTTGCTTTTTGTATTTCAAGTGTGAACACTGAACAAGTCCTTAAGTGAAGCACCAGGTGTTTCCTGCAACACAAAATTTACGTAGCAGATAAATAGTCCTTGAACTGTTTCACGTTGTTGTATTGATATAATAATAATAATGAAGACTCTTCATGCTGCTTTGTGCCAGAACCAGAACCACTTGACTTTGATTTTT
Coding sequences of Glyma.12g226400
>Glyma.12g226400.1 sequence-type=CDS polypeptide=Glyma.12g226400.1.p locus=Glyma.12g226400 ID=Glyma.12g226400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAACCCCACTCACAAGTCCCCTGAGGTTGAAAATGATGGTGATTTTAAAGTTCATCTGTTCTCTTCATCATCCGAGTTGCTTGAAAAGCTTCATGAAAAATGGAGTTCAGTGGAGAAACCACCATACCCAGCTATGTATTCTAGTATTTATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCCATTGATGATCACATGGTTCACAGAGGGCATGGTGTGTTTGATACAGCTATTGTTCTAGATGGATACCTCTATGAGTTGGATGTTCACCTTGACAGATTCCTAAGTTCAGCCTCCAAAGCAAAGATATCCTCTCCCTTTTCTCGATCAGTGCTTCACAGCATTCTAATACAACTAACTGCAGCATCAAAATGCAAGAAGGGAACTCTAAGATACTGGCTCAGTGCAGGTCCTGGAGATTTCTTGCTATCATCAGCAGGATGTCCAACATCTGCATTCTATGCAGTAGTCATTGACCAAGATATTTCCCAATGCAAAGAGGGAGTTAAAGTGATTACTTCCAACATACCAATGAAGCCTTCTCTATTTGCCACAGCCAAAAATGTGAACTATCTTCCAAATGTCCTTTCAGTAATGGAAGCTGAAGAGAAAGGAGCATCTTCTTCTATATGGGTTGATGAGGAAGGTTATATTGCTGAAGGTCCAAATGTGAATGTTGCTTTCATAACTCAAGACAAGGAACTTGTCATGCCTCCTTTTGATAACATCTTACATGGTTGCACTGCAAAAAGGCTCCTTGAACTGGCACCCAAGTTGGTTGATCAAGGGCTTCTGAAAGGTGTAGCAACTAAAAAACTAACTGTGGAGGAAGCTAAAGCTGCTGCTGAAATGATGTATGTAGGAAGCACGCTTCCTCTGTTGCCTATCATCGTCTGGGATGATCAACCCATTGGCAATGGAAGGGTGGGAGAATTAACAATGTTACTTTCGGATATGCTTTGGGATGATATGGTAGCTGGCCCTGGCACACAGAGGATACCTGTTCCTTATGTTGAGTAA

>Glyma.12g226400.2 sequence-type=CDS polypeptide=Glyma.12g226400.2.p locus=Glyma.12g226400 ID=Glyma.12g226400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGTGATTTTAAAGTTCATCTGTTCTCTTCATCATCCGAGATACCTCTATGAGTTGGATGTTCACCTTGACAGATTCCTAAGTTCAGCCTCCAAAGCAAAGATATCCTCTCCCTTTTCTCGATCAGTGCTTCACAGCATTCTAATACAACTAACTGCAGCATCAAAATGCAAGAAGGGAACTCTAAGATACTGGCTCAGTGCAGGTCCTGGAGATTTCTTGCTATCATCAGCAGGATGTCCAACATCTGCATTCTATGCAGTAGTCATTGACCAAGATATTTCCCAATGCAAAGAGGGAGTTAAAGTGATTACTTCCAACATACCAATGAAGCCTTCTCTATTTGCCACAGCCAAAAATGTGAACTATCTTCCAAATGTCCTTTCAGTAATGGAAGCTGAAGAGAAAGGAGCATCTTCTTCTATATGGGTTGATGAGGAAGGTTATATTGCTGAAGGTCCAAATGTGAATGTTGCTTTCATAACTCAAGACAAGGAACTTGTCATGCCTCCTTTTGATAACATCTTACATGGTTGCACTGCAAAAAGGCTCCTTGAACTGGCACCCAAGTTGGTTGATCAAGGGCTTCTGAAAGGTGTAGCAACTAAAAAACTAACTGTGGAGGAAGCTAAAGCTGCTGCTGAAATGATGTATGTAGGAAGCACGCTTCCTCTGTTGCCTATCATCGTCTGGGATGATCAACCCATTGGCAATGGAAGGGTGGGAGAATTAACAATGTTACTTTCGGATATGCTTTGGGATGATATGGTAGCTGGCCCTGGCACACAGAGGATACCTGTTCCTTATGTTGAGTAA

>Glyma.12g226400.3 sequence-type=CDS polypeptide=Glyma.12g226400.3.p locus=Glyma.12g226400 ID=Glyma.12g226400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAACCCCACTCACAAGTCCCCTGAGGTTGAAAATGATGGTGATTTTAAAGTTCATCTGTTCTCTTCATCATCCGAGTTGCTTGAAAAGCTTCATGAAAAATGGAGTTCAGTGGAGAAACCACCATACCCAGCTATGTATTCTAGTATTTATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCCATTGATGATCACATGGTTCACAGAGGGCATGGTGTGTTTGATACAGCTATTGTTCTAGATGGATACCTCTATGAGTTGGATGTTCACCTTGACAGATTCCTAAGTTCAGCCTCCAAAGCAAAGATATCCTCTCCCTTTTCTCGATCAGTGCTTCACAGCATTCTAATACAACTAACTGCAGCATCAAAATGCAAGAAGGGAACTCTAAGATACTGGCTCAGTGCAGGTCCTGGAGATTTCTTGCTATCATCAGCAGGATGTCCAACATCTGCATTCTATGCAGTAGTCATTGACCAAGATATTTCCCAATGCAAAGAGGGAGTTAAAGTGATTACTTCCAACATACCAATGAAGCCTTCTCTATTTGCCACAGCCAAAAATGTGAACTATCTTCCAAATGTCCTTTCAGTAATGGAAGCTGAAGAGAAAGGAGCATCTTCTTCTATATGGGTTGATGAGGAAGGTTATATTGCTGAAGGTCCAAATGTGAATGTTGCTTTCATAACTCAAGACAAGGAACTTGTCATGCCTCCTTTTGATAACATCTTACATGGTTGCACTGCAAAAAGGCTCCTTGAACTGGCACCCAAGTTGGTTGATCAAGGGCTTCTGAAAGGTGTAGCAACTAAAAAACTAACTGTGGAGGAAGCTAAAGCTGCTGCTGAAATGATGTATGTAGGAAGCACGCTTCCTCTGTTGCCTATCATCGTCTGGGATGATCAACCCATTGGCAATGGGTGGGAGAATTAA
Predicted protein sequences of Glyma.12g226400
>Glyma.12g226400.1.p sequence-type=predicted peptide transcript=Glyma.12g226400.1 locus=Glyma.12g226400 ID=Glyma.12g226400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRNPTHKSPEVENDGDFKVHLFSSSSELLEKLHEKWSSVEKPPYPAMYSSIYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIVLDGYLYELDVHLDRFLSSASKAKISSPFSRSVLHSILIQLTAASKCKKGTLRYWLSAGPGDFLLSSAGCPTSAFYAVVIDQDISQCKEGVKVITSNIPMKPSLFATAKNVNYLPNVLSVMEAEEKGASSSIWVDEEGYIAEGPNVNVAFITQDKELVMPPFDNILHGCTAKRLLELAPKLVDQGLLKGVATKKLTVEEAKAAAEMMYVGSTLPLLPIIVWDDQPIGNGRVGELTMLLSDMLWDDMVAGPGTQRIPVPYVE*

>Glyma.12g226400.2.p sequence-type=predicted peptide transcript=Glyma.12g226400.2 locus=Glyma.12g226400 ID=Glyma.12g226400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMVILKFICSLHHPRYLYELDVHLDRFLSSASKAKISSPFSRSVLHSILIQLTAASKCKKGTLRYWLSAGPGDFLLSSAGCPTSAFYAVVIDQDISQCKEGVKVITSNIPMKPSLFATAKNVNYLPNVLSVMEAEEKGASSSIWVDEEGYIAEGPNVNVAFITQDKELVMPPFDNILHGCTAKRLLELAPKLVDQGLLKGVATKKLTVEEAKAAAEMMYVGSTLPLLPIIVWDDQPIGNGRVGELTMLLSDMLWDDMVAGPGTQRIPVPYVE*

>Glyma.12g226400.3.p sequence-type=predicted peptide transcript=Glyma.12g226400.3 locus=Glyma.12g226400 ID=Glyma.12g226400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRNPTHKSPEVENDGDFKVHLFSSSSELLEKLHEKWSSVEKPPYPAMYSSIYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIVLDGYLYELDVHLDRFLSSASKAKISSPFSRSVLHSILIQLTAASKCKKGTLRYWLSAGPGDFLLSSAGCPTSAFYAVVIDQDISQCKEGVKVITSNIPMKPSLFATAKNVNYLPNVLSVMEAEEKGASSSIWVDEEGYIAEGPNVNVAFITQDKELVMPPFDNILHGCTAKRLLELAPKLVDQGLLKGVATKKLTVEEAKAAAEMMYVGSTLPLLPIIVWDDQPIGNGWEN*






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