Glyma.12g222300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.12g222300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.12g222300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.12g222300

Feature Type:	gene_model
Chromosome:	Gm12
Start:	38180854
stop:	38183944
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g222300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52920.1	AT	G protein coupled receptor	JGI	N/A	IEA
GO:0007165	GO-bp	signal transduction	EnsemblGenomes	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
KOG2787	KOG	Lanthionine synthetase C-like protein 1	JGI	N/A	IEA
PTHR12736	Panther	LANC-LIKE PROTEIN	JGI	N/A	IEA
PTHR12736:SF4	Panther		JGI	N/A	IEA
PF05147	PFAM	Lanthionine synthetase C-like protein	JGI	N/A	IEA

Expression Patterns of Glyma.12g222300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g222300 not represented in the dataset	Glyma.12g222300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.12g222300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g35060	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g222300

Limit To All Plant Sequences

>Glyma.12g222300.2 sequence-type=transcript locus=Glyma.12g222300 ID=Glyma.12g222300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCGATATTATGTATGGATTTTCCAGCAAATTCTACTCTGCATTTTTCGCCGTTAGCCGCAGATGGCCGATCGCTTCTTTCCGAACGAGCTGCCACGCTTCGTGGCAGAGACCACAGACCAAACTCCATCACCAGACTCTCTCACTGCCCTTCTCTCTCTCCCTTACCAAACCCTCTCCACAAAGTTCCAAGCATCTGCATTTCACCTCAAACAATCGGTGGTGAGGGACACATGGGGGTCACGTGGGAAGCGTGTGAAGGACTATAGCCTTTACACGGGGGCTCTTGGGACAGCATACCTACTTTTCAAGGCCTACCAAGTAACCAAGGACGGGAATGAACTTAACTTGTGCTCAGAGATTGTTAAAGCTTGTGATTCTGCTTCAGCAGATTCTGGCAAAGTGACATTTATCTGTGGGCGTGCTGGTGTTTGTGCTCTTGGTGCTGTGATAGCTAAGCATACTGGTGATGAAAGATTACTTGACTATTACCTGAGGCAATTCAAAGAGATTGCGATACCTCGCGAGTCTCCCTATGAGCTATTGTATGGCAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTAACAACACAATACCTACTACCCACATGAGATCAATTGTGGATGAAGTTATTATGGCTGGCAGACACTTAGGTCGCAAGGGAAGATGTCCTCTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCTCATGGACTTGCAGGAATTATGCATGCTTTGATGGACATGGAACTCAAGCCAGATGAAGTGGAAGATGTCAAGGGTACGCTAAGATATATGATTAACAATCGTCTCCCTAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAAAATGACCGTCTTGTGCATTGGTGTCATGGTGCTCCTGGACTCACTCTTACTCTTGTAAAGGCAGCTGAGGTTTTTGGGGACAAGGAGTTTTCGCAAGCAGCTGTAGATGCAGGGGAAGTAGTATGGAAGAGGGGTCTGCTTAAGCGAGTTGGGATCTGTCACGGCATCAGTGGGAACACCTATGTCTTTCTTTCTCTTTACAGAATGACAGGAAATGAGGAGTACTTGTACAGGGCCAAAGCATTTGCTTGTTTTCTACTTGATAGGGCACAAAATCTAATCTCAGAAGGAAAAATGCATGGAGGAGATCGCCCCTATTCCTTATTTGAAGGTCTTGGAGGAATGGCATATACTTGTCTAGACATGGTTGATCCACAAATGGCAAAGTTCCCAGGCTATGAACTTTGAGTCGTTTGATACAAGATGCATATTTATATCTCAAAAAAAAAAAAAACTGCCTCCCCAAGAAAGAACCAAATAAATTACGTTTAGGTGTGACAAGGACATGATGCATTCTGACGAAATTTGTATGAGAAAAAAACTGCAACTCCTGCAAATGTGGCTGTGTAATGTAATTCGATATATGTATAGAAGTGAACTGTGATGCATCATGCATGGTTCCTGCTTTAAAAAGTGTTTGATTAGCTTATATCGAGAGGTTAACAAAAAAAGTTAATTTTTAATA

Coding sequences of Glyma.12g222300

Limit To All Plant Sequences

>Glyma.12g222300.1 sequence-type=CDS polypeptide=Glyma.12g222300.1.p locus=Glyma.12g222300 ID=Glyma.12g222300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTTCCAGCAAATTCTACTCTGCATTTTTCGCCGTTAGCCGCAGATGGCCGATCGCTTCTTTCCGAACGAGCTGCCACGCTTCGTGGCAGAGACCACAGACCAAACTCCATCACCAGACTCTCTCACTGCCCTTCTCTCTCTCCCTTACCAAACCCTCTCCACAAAGTTCCAAGCATCTGCATTTCACCTCAAACAATCGGTACTCATAAACTTCATTTTTGGGGTGTTCGAATTTCTGGGTTTCTTTCAATTTACGTTCTTCGCTTTTGGGTGGTGAGGGACACATGGGGGTCACGTGGGAAGCGTGTGAAGGACTATAGCCTTTACACGGGGGCTCTTGGGACAGCATACCTACTTTTCAAGGCCTACCAAGTAACCAAGGACGGGAATGAACTTAACTTGTGCTCAGAGATTGTTAAAGCTTGTGATTCTGCTTCAGCAGATTCTGGCAAAGTGACATTTATCTGTGGGCGTGCTGGTGTTTGTGCTCTTGGTGCTGTGATAGCTAAGCATACTGGTGATGAAAGATTACTTGACTATTACCTGAGGCAATTCAAAGAGATTGCGATACCTCGCGAGTCTCCCTATGAGCTATTGTATGGCAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTAACAACACAATACCTACTACCCACATGAGATCAATTGTGGATGAAGTTATTATGGCTGGCAGACACTTAGGTCGCAAGGGAAGATGTCCTCTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCTCATGGACTTGCAGGAATTATGCATGCTTTGATGGACATGGAACTCAAGCCAGATGAAGTGGAAGATGTCAAGGGTACGCTAAGATATATGATTAACAATCGTCTCCCTAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAAAATGACCGTCTTGTGCATTGGTGTCATGGTGCTCCTGGACTCACTCTTACTCTTGTAAAGGCAGCTGAGGTTTTTGGGGACAAGGAGTTTTCGCAAGCAGCTGTAGATGCAGGGGAAGTAGTATGGAAGAGGGGTCTGCTTAAGCGAGTTGGGATCTGTCACGGCATCAGTGGGAACACCTATGTCTTTCTTTCTCTTTACAGAATGACAGGAAATGAGGAGTACTTGTACAGGGCCAAAGCATTTGCTTGTTTTCTACTTGATAGGGCACAAAATCTAATCTCAGAAGGAAAAATGCATGGAGGAGATCGCCCCTATTCCTTATTTGAAGGTCTTGGAGGAATGGCATATACTTGTCTAGACATGGTTGATCCACAAATGGCAAAGTTCCCAGGCTATGAACTTTGA

>Glyma.12g222300.2 sequence-type=CDS polypeptide=Glyma.12g222300.2.p locus=Glyma.12g222300 ID=Glyma.12g222300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATCGCTTCTTTCCGAACGAGCTGCCACGCTTCGTGGCAGAGACCACAGACCAAACTCCATCACCAGACTCTCTCACTGCCCTTCTCTCTCTCCCTTACCAAACCCTCTCCACAAAGTTCCAAGCATCTGCATTTCACCTCAAACAATCGGTGGTGAGGGACACATGGGGGTCACGTGGGAAGCGTGTGAAGGACTATAGCCTTTACACGGGGGCTCTTGGGACAGCATACCTACTTTTCAAGGCCTACCAAGTAACCAAGGACGGGAATGAACTTAACTTGTGCTCAGAGATTGTTAAAGCTTGTGATTCTGCTTCAGCAGATTCTGGCAAAGTGACATTTATCTGTGGGCGTGCTGGTGTTTGTGCTCTTGGTGCTGTGATAGCTAAGCATACTGGTGATGAAAGATTACTTGACTATTACCTGAGGCAATTCAAAGAGATTGCGATACCTCGCGAGTCTCCCTATGAGCTATTGTATGGCAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTAACAACACAATACCTACTACCCACATGAGATCAATTGTGGATGAAGTTATTATGGCTGGCAGACACTTAGGTCGCAAGGGAAGATGTCCTCTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCTCATGGACTTGCAGGAATTATGCATGCTTTGATGGACATGGAACTCAAGCCAGATGAAGTGGAAGATGTCAAGGGTACGCTAAGATATATGATTAACAATCGTCTCCCTAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAAAATGACCGTCTTGTGCATTGGTGTCATGGTGCTCCTGGACTCACTCTTACTCTTGTAAAGGCAGCTGAGGTTTTTGGGGACAAGGAGTTTTCGCAAGCAGCTGTAGATGCAGGGGAAGTAGTATGGAAGAGGGGTCTGCTTAAGCGAGTTGGGATCTGTCACGGCATCAGTGGGAACACCTATGTCTTTCTTTCTCTTTACAGAATGACAGGAAATGAGGAGTACTTGTACAGGGCCAAAGCATTTGCTTGTTTTCTACTTGATAGGGCACAAAATCTAATCTCAGAAGGAAAAATGCATGGAGGAGATCGCCCCTATTCCTTATTTGAAGGTCTTGGAGGAATGGCATATACTTGTCTAGACATGGTTGATCCACAAATGGCAAAGTTCCCAGGCTATGAACTTTGA

Predicted protein sequences of Glyma.12g222300

Limit To All Plant Sequences

>Glyma.12g222300.1.p sequence-type=predicted peptide transcript=Glyma.12g222300.1 locus=Glyma.12g222300 ID=Glyma.12g222300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFPANSTLHFSPLAADGRSLLSERAATLRGRDHRPNSITRLSHCPSLSPLPNPLHKVPSICISPQTIGTHKLHFWGVRISGFLSIYVLRFWVVRDTWGSRGKRVKDYSLYTGALGTAYLLFKAYQVTKDGNELNLCSEIVKACDSASADSGKVTFICGRAGVCALGAVIAKHTGDERLLDYYLRQFKEIAIPRESPYELLYGRAGYLWACSFLNKHIGNNTIPTTHMRSIVDEVIMAGRHLGRKGRCPLMYEWHGKKYWGAAHGLAGIMHALMDMELKPDEVEDVKGTLRYMINNRLPSGNYPSSEGSENDRLVHWCHGAPGLTLTLVKAAEVFGDKEFSQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRMTGNEEYLYRAKAFACFLLDRAQNLISEGKMHGGDRPYSLFEGLGGMAYTCLDMVDPQMAKFPGYEL*

>Glyma.12g222300.2.p sequence-type=predicted peptide transcript=Glyma.12g222300.2 locus=Glyma.12g222300 ID=Glyma.12g222300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADRFFPNELPRFVAETTDQTPSPDSLTALLSLPYQTLSTKFQASAFHLKQSVVRDTWGSRGKRVKDYSLYTGALGTAYLLFKAYQVTKDGNELNLCSEIVKACDSASADSGKVTFICGRAGVCALGAVIAKHTGDERLLDYYLRQFKEIAIPRESPYELLYGRAGYLWACSFLNKHIGNNTIPTTHMRSIVDEVIMAGRHLGRKGRCPLMYEWHGKKYWGAAHGLAGIMHALMDMELKPDEVEDVKGTLRYMINNRLPSGNYPSSEGSENDRLVHWCHGAPGLTLTLVKAAEVFGDKEFSQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRMTGNEEYLYRAKAFACFLLDRAQNLISEGKMHGGDRPYSLFEGLGGMAYTCLDMVDPQMAKFPGYEL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain