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Report for Sequence Feature Glyma.12g216000

Feature Type:gene_model
Chromosome:Gm12
Start:37507246
stop:37512436
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g216000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54590.2AT Protein kinase superfamily protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF419Panther JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA

Proteins Associated with Glyma.12g216000
LocusGene SymbolProtein Name
CAMK1 CaM-binding protein kinase CaMK1

Expression Patterns of Glyma.12g216000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g216000
ParalogEvidenceComments
Glyma.13g285500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g216000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g34410 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g216000
>Glyma.12g216000.2 sequence-type=transcript locus=Glyma.12g216000 ID=Glyma.12g216000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGAACTTTTTATCAGTTTTTCCGAAACTGTGTCTGCTTTCAACTCTCTAGTTGCACATAACATAACAGTAACACATTCTTTTCTCTCGTTTTTGTTATTGGAATCTCGTTCACTTCAGGTTTCTTTACCCTTTTGATTCCTTCCCACTTCTGAGTTTCACTTTGGTGTCTTTAGCAACGTTTCCACGAAACACGTAGCCAACTGCCTTCAGTTAATTCAGCTTTTTTTCTTCTAGTGTGTGAATTGGTATGTAAATGGATTGGATGATCAATAGGGAATTATAGCACAGAAGAGGAACTAGGAGAGATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgttatgttgttgggaaggttacatcatagaaatctggtcaatttggtcgggtattgtgcagaaaaggggcaacatatgcttgtatatgtctacatgagtaaaggaagcttGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAGAATAAGGTTTTGCATTTAGCTAAGTTCTTTTGGTTACATTGAATTTTTGGTTTTTGCCTTTGGATTTGATGATGATGCCCGCCATCATCTTCTGTAGTTGTGTTAACATGTTCTTTTGTTGTTTTATTTTTTTTTCTCATTTGTTTTTTGTTTATTTATCTTACCTAGTTCTGTCGTCTCGCAGAAATGACACAACAAAATTTGTATATTAATACTTTCAAGAATTAATTTGAAGTGTCAAAAGAGAAAGTCATCTATTTTCATACTCT
Coding sequences of Glyma.12g216000
>Glyma.12g216000.1 sequence-type=CDS polypeptide=Glyma.12g216000.1.p locus=Glyma.12g216000 ID=Glyma.12g216000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAG

>Glyma.12g216000.2 sequence-type=CDS polypeptide=Glyma.12g216000.2.p locus=Glyma.12g216000 ID=Glyma.12g216000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAG
Predicted protein sequences of Glyma.12g216000
>Glyma.12g216000.1.p sequence-type=predicted peptide transcript=Glyma.12g216000.1 locus=Glyma.12g216000 ID=Glyma.12g216000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAHTIPIRENGVDSCNILSDSTLGPESPVRSGRNGMSLWLDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNQVAALAYKCINRAPKKRPSMRDIVQVFTRILKSRYQRNHHHKKSLSATVDEVSIDVDQLETKSSVTDHRREESIDSTADIYDL*

>Glyma.12g216000.2.p sequence-type=predicted peptide transcript=Glyma.12g216000.2 locus=Glyma.12g216000 ID=Glyma.12g216000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAHTIPIRENGVDSCNILSDSTLGPESPVRSGRNGMSLWLDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNQVAALAYKCINRAPKKRPSMRDIVQVFTRILKSRYQRNHHHKKSLSATVDEVSIDVDQLETKSSVTDHRREESIDSTADIYDL*






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