Glyma.12g213300

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Report for Sequence Feature Glyma.12g213300

Feature Type:	gene_model
Chromosome:	Gm12
Start:	37219675
stop:	37228348
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g213300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27100.2	AT	Ypt/Rab-GAP domain of gyp1p superfamily protein	JGI	N/A	IEA
KOG2197	KOG	Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins	JGI	N/A	IEA
PTHR22957	Panther	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	JGI	N/A	IEA
PTHR22957:SF30	Panther		JGI	N/A	IEA
PF00566	PFAM	Rab-GTPase-TBC domain	JGI	N/A	IEA

Expression Patterns of Glyma.12g213300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g213300 not represented in the dataset	Glyma.12g213300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g213300

Paralog	Evidence	Comments
Glyma.13g288400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g213300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g34110	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g213300

Limit To All Plant Sequences

>Glyma.12g213300.2 sequence-type=transcript locus=Glyma.12g213300 ID=Glyma.12g213300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGAAAGGGTAATGAAAATTTGGGAATCTTCTTCTGTTCCTAATTCCTATTCCACCCTTTTGACAGGGTTCATGTTCCTCTCACACCATCATCATCGCCACTACCAACCCAACCACCTCCACAATGCCATAACATTCTAACTTTTAGCTTAATACAATAATATCCAAAAAAAACCGTTATTTTTTTTTGTTCTGTGTAGCTTTTTGGAGTTGTATCCTCCTTGAATTCTTCACTTGATAAGTTTTTGTTTCTGGGTTTGCTTGATCTTCCCAAAGGGTCCAGCCCCTGCATTCTGCTAAGGATTGTTGATACCACAAATCATTGCTTTTTAGTTGTTTTTGTTTCCCTTTTGTTTGGTTAATTGGGATGTGGAGAGATCCGGGAGTTCCAGCTGATTCTTTCTATGAAATCCGCCCCGAATGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGAATGCAATATGCTACATGGAAAGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTGTTGAAAGAAACAAGTCAGGCCAAGGGATTGGCTGTACATCCTCAATATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGCAAAGGTGACAGACAAGACAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCCAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTTAGATGCACTGAGAGCTCTGTTGGTGTGGCAGCTCAACTAAGTAATTTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTCAATCAGCTTCTGAAAAGGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCTGAAGCACCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGAGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCCAAAAAAGCTTGCTGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAGCACCAAATACATCCAAATATCCAATGATTCTTTTGTAGTGTGTTGTATGATACATGTGTAGCTCCCTGGGAGTCAATAATGGAGAACATAGGACTTTACAGAATTGAAAAAAGGGATTCAAATATCCAACCTTCAAAATCCCTGAACAATTGTTGTATGTGAAATCATTTCTTCTTTCTTTTGTATCCATAAAAGAAGTGAGATTGTATATTATAAAATATGAAAACAGAATTGTTCTGTACAACCATCTATTTGTACTTTGTTATTGCATAGAGGAAACAGGTCACAGGGAACAGCCATTCATTTCGAGCCAATGAAATTAATTTTGTTTTGAT

>Glyma.12g213300.3 sequence-type=transcript locus=Glyma.12g213300 ID=Glyma.12g213300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCCTAAAATTATTGAAGATAATGGTTTGTTATGTGCACAAGTGCAAAGAAACAAGTGTTTTTATATGTAGCTGTGGGTTGATGGGTCCTTTAATAAATTTTCAAACCAGGGAGTCCATCCATCAATTAAGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGGCGAAGAATGCAATATGCTACATGGAAAGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTGTTGAAAGAAACAAGTCAGGCCAAGGGATTGGCTGTACATCCTCAATATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGCAAAGGTGACAGACAAGACAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCCAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTTAGATGCACTGAGAGCTCTGTTGGTGTGGCAGCTCAACTAAGTAATTTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTCAATCAGCTTCTGAAAAGGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCTGAAGCACCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGAGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCCAAAAAAGCTTGCTGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAGCACCAAATACATCCAAATATCCAATGATTCTTTTGTAGTGTGTTGTATGATACATGTGTAGCTCCCTGGGAGTCAATAATGGAGAACATAGGACTTTACAGAATTGAAAAAAGGGATTCAAATATCCAACCTTCAAAATCCCTGAACAATTGTTGTATGTGAAATCATTTCTTCTTTCTTTTGTATCCATAAAAGAAGTGAGATTGTATATTATAAAATATGAAAACAGAATTGTTCTGTACAACCATCTATTTGTACTTTGTTATTGCATAGAGGAAACAGGTCACAGGGAACAGCCATTCATTTCGAGCCAATGAAATTAATTTTGTTTTGAT

Coding sequences of Glyma.12g213300

Limit To All Plant Sequences

>Glyma.12g213300.1 sequence-type=CDS polypeptide=Glyma.12g213300.1.p locus=Glyma.12g213300 ID=Glyma.12g213300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAGAGATCCGGGAGTTCCAGCTGATTCTTTCTATGAAATCCGCCCCGAATGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGGGAGTCCATCCATCAATTAAGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGGCGAAGAATGCAATATGCTACATGGAAAGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTGTTGAAAGAAACAAGTCAGGCCAAGGGATTGGCTGTACATCCTCAATATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGCAAAGGTGACAGACAAGACAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCCAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTTAGATGCACTGAGAGCTCTGTTGGTGTGGCAGCTCAACTAAGTAATTTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTCAATCAGCTTCTGAAAAGGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCTGAAGCACCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGAGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCCAAAAAAGCTTGCTGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG

>Glyma.12g213300.2 sequence-type=CDS polypeptide=Glyma.12g213300.2.p locus=Glyma.12g213300 ID=Glyma.12g213300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATCCGCCCCGAATGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGAATGCAATATGCTACATGGAAAGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTGTTGAAAGAAACAAGTCAGGCCAAGGGATTGGCTGTACATCCTCAATATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGCAAAGGTGACAGACAAGACAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCCAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTTAGATGCACTGAGAGCTCTGTTGGTGTGGCAGCTCAACTAAGTAATTTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTCAATCAGCTTCTGAAAAGGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCTGAAGCACCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGAGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCCAAAAAAGCTTGCTGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG

>Glyma.12g213300.3 sequence-type=CDS polypeptide=Glyma.12g213300.3.p locus=Glyma.12g213300 ID=Glyma.12g213300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATATGCTACATGGAAAGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTGTTGAAAGAAACAAGTCAGGCCAAGGGATTGGCTGTACATCCTCAATATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGCAAAGGTGACAGACAAGACAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCCAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTTAGATGCACTGAGAGCTCTGTTGGTGTGGCAGCTCAACTAAGTAATTTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTCAATCAGCTTCTGAAAAGGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCTGAAGCACCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGAGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCCAAAAAAGCTTGCTGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG

Predicted protein sequences of Glyma.12g213300

Limit To All Plant Sequences

>Glyma.12g213300.1.p sequence-type=predicted peptide transcript=Glyma.12g213300.1 locus=Glyma.12g213300 ID=Glyma.12g213300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRDPGVPADSFYEIRPECTDVPVTRFKIKGVHPSIKGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECHQLFPLVGSGRFVTAPVITEDGQPIQDPLVLKETSQAKGLAVHPQYNNSPSSMDAANNLAKVTDKTVVQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQSASEKAEGSKGKTKSIRQCGKYEREIVKSGAKNAEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVKILNDTTGNIDAKKACCGAMKLHKKYLKKAKKP*

>Glyma.12g213300.2.p sequence-type=predicted peptide transcript=Glyma.12g213300.2 locus=Glyma.12g213300 ID=Glyma.12g213300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSAPNAPMFPLLDLRSRMQYATWKEECHQLFPLVGSGRFVTAPVITEDGQPIQDPLVLKETSQAKGLAVHPQYNNSPSSMDAANNLAKVTDKTVVQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQSASEKAEGSKGKTKSIRQCGKYEREIVKSGAKNAEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVKILNDTTGNIDAKKACCGAMKLHKKYLKKAKKP*

>Glyma.12g213300.3.p sequence-type=predicted peptide transcript=Glyma.12g213300.3 locus=Glyma.12g213300 ID=Glyma.12g213300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQYATWKEECHQLFPLVGSGRFVTAPVITEDGQPIQDPLVLKETSQAKGLAVHPQYNNSPSSMDAANNLAKVTDKTVVQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQSASEKAEGSKGKTKSIRQCGKYEREIVKSGAKNAEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVKILNDTTGNIDAKKACCGAMKLHKKYLKKAKKP*

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