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Report for Sequence Feature Glyma.12g210400

Feature Type:gene_model
Chromosome:Gm12
Start:36943077
stop:36946491
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g210400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42590.2AT general regulatory factor 9 JGI N/AIEA
GO:0071555GO-bp cell wall organization EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0019904GO-mf protein domain specific binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
KOG0841 KOG Multifunctional chaperone (14-3-3 family) JGI N/AIEA
PTHR18860Panther 14-3-3 PROTEIN JGI N/AIEA
PF00244PFAM 14-3-3 protein JGI N/AIEA

Proteins Associated with Glyma.12g210400
LocusGene SymbolProtein Name
SGF14O 14-3-3 protein SGF14o
GF14n GF14 gene family gene n

Expression Patterns of Glyma.12g210400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g210400
ParalogEvidenceComments
Glyma.13g290900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g210400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g33800 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g210400
>Glyma.12g210400.2 sequence-type=transcript locus=Glyma.12g210400 ID=Glyma.12g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGACACATTTGACATTTCACGACCGCGTTCTTTTCTACGGAGCCTCGACCAAGAAGAATCGCagagagaagagggtcagagtgagaaagagagagagagagagagaaactgagagaAATTCGCAAACCCTAATTTCGGAAAGATCGGCGATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGAGTCCGATTGTTGATGGGATCTTCCTTAGGATTCGATGCATGCGTTTGGGAATGAAACATGAGGGCCGTTACTTATCCGTGTATTAGCTAGAGATAGGGTTCCATTGTTTTCTCTTTGTTTCTTGTTGATTGCCCCATACTTCCCGATAGGGGAAAGAGATACTCCATTTGTGCTATATTTATGGTATGTTTTTATTTGTGTGGTGTCTGGAAATGGCCTATTTCATTCCCAATCCTTTTCCTCCAGTCTCTGGGGGATTTGATTGATGAGAATTGCTTATGGTGTATTTCCTTTTCCAATGAAATGCTACAACCTTTACTGCAATGTTGGAGATTTATTCTTCGATTGTTTGATCTTGACTTCCATTCTTACCAATTCTATTGCCGCAAAAACGTGGAACAAGTTAATAAACGGCTGAGAAAGTTGTGTGGCTTC
Coding sequences of Glyma.12g210400
>Glyma.12g210400.1 sequence-type=CDS polypeptide=Glyma.12g210400.1.p locus=Glyma.12g210400 ID=Glyma.12g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGA

>Glyma.12g210400.2 sequence-type=CDS polypeptide=Glyma.12g210400.2.p locus=Glyma.12g210400 ID=Glyma.12g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGA
Predicted protein sequences of Glyma.12g210400
>Glyma.12g210400.1.p sequence-type=predicted peptide transcript=Glyma.12g210400.1 locus=Glyma.12g210400 ID=Glyma.12g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMTVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKAGNEKKEAADQSMKAYESATTAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKVNGTAKLGGGEEAE*

>Glyma.12g210400.2.p sequence-type=predicted peptide transcript=Glyma.12g210400.2 locus=Glyma.12g210400 ID=Glyma.12g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMTVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKAGNEKKEAADQSMKAYESATTAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDAQKVNGTAKLGGGEEAE*






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