Glyma.12g210400

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Report for Sequence Feature Glyma.12g210400

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36943077
stop:	36946491
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g210400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42590.2	AT	general regulatory factor 9	JGI	N/A	IEA
GO:0071555	GO-bp	cell wall organization	EnsemblGenomes	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0019904	GO-mf	protein domain specific binding	EnsemblGenomes	N/A	IEA
GO:0051536	GO-mf	iron-sulfur cluster binding	EnsemblGenomes	N/A	IEA
KOG0841	KOG	Multifunctional chaperone (14-3-3 family)	JGI	N/A	IEA
PTHR18860	Panther	14-3-3 PROTEIN	JGI	N/A	IEA
PF00244	PFAM	14-3-3 protein	JGI	N/A	IEA

Proteins Associated with Glyma.12g210400

Locus	Gene Symbol	Protein Name
	SGF14O	14-3-3 protein SGF14o
	GF14n	GF14 gene family gene n

Expression Patterns of Glyma.12g210400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g210400 not represented in the dataset	Glyma.12g210400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g210400

Paralog	Evidence	Comments
Glyma.13g290900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g210400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g33800	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g210400

Limit To All Plant Sequences

>Glyma.12g210400.2 sequence-type=transcript locus=Glyma.12g210400 ID=Glyma.12g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGACACATTTGACATTTCACGACCGCGTTCTTTTCTACGGAGCCTCGACCAAGAAGAATCGCagagagaagagggtcagagtgagaaagagagagagagagagagaaactgagagaAATTCGCAAACCCTAATTTCGGAAAGATCGGCGATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGAGTCCGATTGTTGATGGGATCTTCCTTAGGATTCGATGCATGCGTTTGGGAATGAAACATGAGGGCCGTTACTTATCCGTGTATTAGCTAGAGATAGGGTTCCATTGTTTTCTCTTTGTTTCTTGTTGATTGCCCCATACTTCCCGATAGGGGAAAGAGATACTCCATTTGTGCTATATTTATGGTATGTTTTTATTTGTGTGGTGTCTGGAAATGGCCTATTTCATTCCCAATCCTTTTCCTCCAGTCTCTGGGGGATTTGATTGATGAGAATTGCTTATGGTGTATTTCCTTTTCCAATGAAATGCTACAACCTTTACTGCAATGTTGGAGATTTATTCTTCGATTGTTTGATCTTGACTTCCATTCTTACCAATTCTATTGCCGCAAAAACGTGGAACAAGTTAATAAACGGCTGAGAAAGTTGTGTGGCTTC

Coding sequences of Glyma.12g210400

Limit To All Plant Sequences

>Glyma.12g210400.1 sequence-type=CDS polypeptide=Glyma.12g210400.1.p locus=Glyma.12g210400 ID=Glyma.12g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGA

>Glyma.12g210400.2 sequence-type=CDS polypeptide=Glyma.12g210400.2.p locus=Glyma.12g210400 ID=Glyma.12g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGA

Predicted protein sequences of Glyma.12g210400

Limit To All Plant Sequences

>Glyma.12g210400.1.p sequence-type=predicted peptide transcript=Glyma.12g210400.1 locus=Glyma.12g210400 ID=Glyma.12g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMTVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKAGNEKKEAADQSMKAYESATTAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKVNGTAKLGGGEEAE*

>Glyma.12g210400.2.p sequence-type=predicted peptide transcript=Glyma.12g210400.2 locus=Glyma.12g210400 ID=Glyma.12g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMTVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKAGNEKKEAADQSMKAYESATTAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDAQKVNGTAKLGGGEEAE*

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