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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20860.1 | AT | lipoic acid synthase 1 | JGI | N/A | IEA |
| GO:0009107 | GO-bp | lipoate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009249 | GO-bp | protein lipoylation | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016783 | GO-mf | sulfurtransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016992 | GO-mf | lipoate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG2672 | KOG | Lipoate synthase | JGI | N/A | IEA |
| PTHR10949 | Panther | LIPOYL SYNTHASE | JGI | N/A | IEA |
| PTHR10949:SF0 | Panther | LIPOYL SYNTHASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF04055 | PFAM | Radical SAM superfamily | JGI | N/A | IEA |
| PWY0-1275 | SoyCyc9 | lipoate biosynthesis and incorporation II | Plant Metabolic Network | ISS | |
| PWY0-501 | SoyCyc9 | lipoate biosynthesis and incorporation I | Plant Metabolic Network | ISS | |
| GN7V-50848 | SoyCyc9-rxn | lipoyl synthase | Plant Metabolic Network | ISS |
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Glyma.12g202200 not represented in the dataset |
Glyma.12g202200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g299900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g32890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g202200.1 sequence-type=CDS polypeptide=Glyma.12g202200.1.p locus=Glyma.12g202200 ID=Glyma.12g202200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGATGCATTCACGGGTCAGAAGCGTCGCCGGAAACATCAAATGCGCAGCGAGACTCTTCTGTTCATCTTCGACGACCACGCCGCCGGCTGCGCCGTTGCAGTTCCCGCAGACTCTGGCGGGGCTCCGGGCGCGGCTGGCGGAGGAGTCGCCGTCGCTGTCGGACTTCCTCGCGTTAAAATCGGAGAGCGCGTACTCGGTGGAGGTCGGGACTAAGAAGAAGCCGCTTCCGAAGCCGAAGTGGATGAAGGAGGCCGTTCCCGGCGGCGAGAAGTACGTGCAGATCAAGAAGAAGCTCCGTGAATTGAAGCTTCACACGGTTTGCGAGGAGGCTCGGTGCCCTAATTTGGGGGAGTGCTGGTCCGGAGGCGAGACCGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGAGCCCACCAATGTGGCTGAAGCAATTGCATCTTGGGGTCTGGATTATGTGGTTATAACGAGTGTTGACCGTGATGATTTGCCTGATCAAGGGAGTGGTCATTTTACCGAAACAGTGCAGAAGCTGAAGGCACTGAAGCCTAATATGCTGATAGAAGCCTTAGTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAGGATTAGATGTCTTTGCACACAACATTGAGACAGTTGAAGAGCTTCAGAGTGTTGTACGGGATCATCGTGCTAATTTTAAGCAGTCATTAGATGTTCTAATGATGGCCAAGGAAAATGCTCCTGCTGGAACACTTACTAAGACTTCAATAATGTTAGGTTGTGGGGAAACACCTGATCAGGTTGTGAAGACAATGGAGAAGGTGAGAGCAGCTGGTGTTGACGTGATGACATTTGGTCAGTATATGAGACCTTCAAAGCGCCATATGCCGGTATCTGAATATGTTACACCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATGGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAGGTGAATTCTATATTAAATCCATGATTGAATCAGATCGGGCTGCTTCTCCCTCAAAGCTGACCTCTTCTTGA
>Glyma.12g202200.1.p sequence-type=predicted peptide transcript=Glyma.12g202200.1 locus=Glyma.12g202200 ID=Glyma.12g202200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVMHSRVRSVAGNIKCAARLFCSSSTTTPPAAPLQFPQTLAGLRARLAEESPSLSDFLALKSESAYSVEVGTKKKPLPKPKWMKEAVPGGEKYVQIKKKLRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLPDQGSGHFTETVQKLKALKPNMLIEALVPDFRGDADCVEKVAKSGLDVFAHNIETVEELQSVVRDHRANFKQSLDVLMMAKENAPAGTLTKTSIMLGCGETPDQVVKTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFDKYQKLGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRAASPSKLTSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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