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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03280.1 | AT | photosynthetic electron transfer C | JGI | N/A | IEA |
| GO:0015979 | GO-bp | photosynthesis | EnsemblGenomes | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0042651 | GO-cc | thylakoid membrane | EnsemblGenomes | N/A | IEA |
| GO:0042651 | GO-cc | thylakoid membrane | JGI | N/A | IEA |
| GO:0009496 | GO-mf | plastoquinol--plastocyanin reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0009496 | GO-mf | plastoquinol--plastocyanin reductase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016679 | GO-mf | oxidoreductase activity, acting on diphenols and related substances as donors | EnsemblGenomes | N/A | IEA |
| GO:0045158 | GO-mf | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | EnsemblGenomes | N/A | IEA |
| GO:0051537 | GO-mf | 2 iron, 2 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051537 | GO-mf | 2 iron, 2 sulfur cluster binding | JGI | N/A | IEA |
| KOG1671 | KOG | Ubiquinol cytochrome c reductase, subunit RIP1 | JGI | N/A | IEA |
| PTHR10134 | Panther | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00355 | PFAM | Rieske [2Fe-2S] domain | JGI | N/A | IEA |
| PF08802 | PFAM | Cytochrome B6-F complex Fe-S subunit | JGI | N/A | IEA |
| PHOTOALL-PWY | SoyCyc9 | oxygenic photosynthesis | Plant Metabolic Network | ISS | |
| PWY-101 | SoyCyc9 | photosynthesis light reactions | Plant Metabolic Network | ISS | |
| GN7V-42326 | SoyCyc9-rxn | plastoquinol-plastocyanin reductase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PETC | Rieske iron-sulphur protein precursor |
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Glyma.12g199400 not represented in the dataset |
Glyma.12g199400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g302900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g32580 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g199400.1 sequence-type=CDS polypeptide=Glyma.12g199400.1.p locus=Glyma.12g199400 ID=Glyma.12g199400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATCCACCACTCTATCCCCTACAACCCCTTCTCAGCTATGCTCAGGAAAGAGTGGGATTTTCAGTCCCTCACAGGCACTTCTTGTGAAGCCAGTGAAGAGGCAGATGATGGGGAAGAGCAAGGGAATGAGAATTGCATGCCAAGCCACCAGCATTCCTGCTGATAGAGTCCCTGACATGGGCAAAAGACAGCTCATGAATCTGCTTCTTCTTGGTGCCATTTCACTCCCCTCTGCTGGAATGCTTATTCCCTACACCTACTTTTTTGTCCCTCCAGGTTCAGGTTCTTCAGCTGGTGGTACTGTTGCCAAGGATGCTGTTGGAAATGATGTAATTGCAGAGAATTGGCTCAAGGCACATGGACCTGGTGACCGAACCCTTGCACAAGGATTGAAGGGAGATCCTACCTATCTTGTTGTGGAGAAAGACAGAACCCTTGCAACATATGCAATTAATGCCGTGTGCACTCACCTTGGATGTGTCGTGCCATGGAATCAAGCAGAGAACAAGTTCATCTGCCCTTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCCTTGTCTCTGGCATTAGCACATTGTGATATAGATGATGGGAAGGTGGTGTTTGTTCCTTGGGTTGAAACAGATTTCAGAACAGGTGATGCTCCATGGTGGGCTTAG
>Glyma.12g199400.1.p sequence-type=predicted peptide transcript=Glyma.12g199400.1 locus=Glyma.12g199400 ID=Glyma.12g199400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASTTLSPTTPSQLCSGKSGIFSPSQALLVKPVKRQMMGKSKGMRIACQATSIPADRVPDMGKRQLMNLLLLGAISLPSAGMLIPYTYFFVPPGSGSSAGGTVAKDAVGNDVIAENWLKAHGPGDRTLAQGLKGDPTYLVVEKDRTLATYAINAVCTHLGCVVPWNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDIDDGKVVFVPWVETDFRTGDAPWWA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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