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Report for Sequence Feature Glyma.12g193400

Feature Type:gene_model
Chromosome:Gm12
Start:35488883
stop:35491610
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g193400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65560.1AT Zinc-binding dehydrogenase family protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1196 KOG Predicted NAD-dependent oxidoreductase JGI N/AIEA
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI N/AIEA
PTHR11695:SF5Panther PROSTAGLANDIN REDUCTASE 1 JGI N/AIEA
PF00107PFAM Zinc-binding dehydrogenase JGI N/AIEA
PWY-6786SoyCyc9 detoxification of reactive carbonyls in chloroplasts Plant Metabolic Network ISS
GN7V-42604SoyCyc9-rxn allyl-alcohol dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g193400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g193400
ParalogEvidenceComments
Glyma.13g309100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g193400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g31960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g193400
>Glyma.12g193400.1 sequence-type=CDS polypeptide=Glyma.12g193400.1.p locus=Glyma.12g193400 ID=Glyma.12g193400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGAAGAGGTGAAAAGCTTGGTTGTTGAAGAGGAAATGGGGGTGGTGGAAAGCAAAGAATGGTACTTGGTATCTTATGCTCCACACGGTGTTCCAACCACCGATCATCTTAAACTCCGCAAGGTTCGTCTATCAATTGCACCTGAATCAATCCCTGACGCCCATGTTGCCATTGAGATGCTGCTTTTCTCTGTAGATCCATATCTTCGAGGCAGATTCACTGGAACCTTAGATGGCCTTTATTTTCCGCAGTTTGAACTCAACCAGGTGATCACAATATTTGGGATTGGAAGAGTGAAACGATCAAATGACAGTAAATATGAAGAGGGAGATATTGTTTTGAGTGCAAGTTTTCCTGTTGCTGAGTATTGTGTGATGCCCTCCAGTGAGATCGATGCAAAAATTGATGCTGCAAGTGGGATTTCATTGCCGGATTATCTGAGCACTCTAGGAGTGCCTGGATTTGCAGCATGGCTGGGGATAGAGGTGGTGGCAGACCCCAAACCTGGTTCAAATGTGTTCATATCTGCAGCTTCAGGTGGTGTGGGAATGATTGCTGGTCAATTGGCTAAGATCAGAGGTTGTAGGGTCATCGGAAGCACGGGATCTGATGAAAAAGTGAGGCTAATCAAAGAGGAATTTGGGTATGATGATGGATTCAACTACAAAAAGGAAGAGGACCTTGATGCAGTTCTAAGCAAGTTCTTTCCTAATGGTATTGATGTTTACCTTGACAATGTTGGCGGGAAGATGCTTGAATCTGTACTGAATCATGTCAACAAGTTTGCCAGGATACCACTTTGCGGGATGATATCTCAATATAACCAGGCTTGGACAGAAAGAGAAGGCGTCAGGAATCTTTTGAATTTGGTGGGCAAGGAAGTAAGAATGGAAGGGTTTTTGCTGAAAACACATTTCAATCGTTTTGGAGACTTTGCAAAAGAGATTGAGGGCCACATAAAAGAAGGGAGGCTTAAGCCCAAGACTAAAATAAACTTCGGAATTGAGAGCTTTTTGGATAGCTTGAACTCCTTGTTTTCTAGCTCTAATATTGGAAAAGTAGTTATTCAAGTTAATAAGGCTTAA
Predicted protein sequences of Glyma.12g193400
>Glyma.12g193400.1.p sequence-type=predicted peptide transcript=Glyma.12g193400.1 locus=Glyma.12g193400 ID=Glyma.12g193400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGEEVKSLVVEEEMGVVESKEWYLVSYAPHGVPTTDHLKLRKVRLSIAPESIPDAHVAIEMLLFSVDPYLRGRFTGTLDGLYFPQFELNQVITIFGIGRVKRSNDSKYEEGDIVLSASFPVAEYCVMPSSEIDAKIDAASGISLPDYLSTLGVPGFAAWLGIEVVADPKPGSNVFISAASGGVGMIAGQLAKIRGCRVIGSTGSDEKVRLIKEEFGYDDGFNYKKEEDLDAVLSKFFPNGIDVYLDNVGGKMLESVLNHVNKFARIPLCGMISQYNQAWTEREGVRNLLNLVGKEVRMEGFLLKTHFNRFGDFAKEIEGHIKEGRLKPKTKINFGIESFLDSLNSLFSSSNIGKVVIQVNKA*






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