SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08440.1 | AT | Aluminium activated malate transporter family protein | JGI | N/A | IEA |
| GO:0015743 | GO-bp | malate transport | EnsemblGenomes | N/A | IEA |
| GO:0015743 | GO-bp | malate transport | JGI | N/A | IEA |
| GO:0071423 | GO-bp | malate transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0009705 | GO-cc | plant-type vacuole membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0015140 | GO-mf | malate transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| PF11744 | PFAM | Aluminium activated malate transporter | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ALMT25 | aluminum-activated malate transporter family protein |
|
|
|
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g31450 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g188500.1 sequence-type=CDS polypeptide=Glyma.12g188500.1.p locus=Glyma.12g188500 ID=Glyma.12g188500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTTGCCTAGCGAGTTTAGTGCTAAGGTAGTGGATGTGATGTCACAAATAAAGAAAGTGGGAAAAGAAGATCCAAGAAGGGTGATTCATGCGTTGAAAGTAGCACTCTCCATCACCTTAGTTTCAGCATTTTACTATGTCAACCCTCTTTATGATGGTTTTGGCTCATCTGCAATGTATGCAGTTTTCACTGTCATTGTTGTCTCAGAGTTCTCCGTAGGAGCAACACTTGGAAAAGGTTTAAATAGAGGTTTTGCAACGTTTTTGGCTGGTGCTCTTGGGCTTGGATCTTATTACCTGGTGCATTCAATTTCAACAGAACACATAGTGGAGCCCATACTTCTAGGAACCTTAATTTATCTGATAACTGCAGGAATCACATATTTTCGATTTTTACCTCAAATAAAAGCGAGATACGATTACGGGTTGCTGGTGTTTAATTTGACATTCTGTCTGGTGTCTGTGTCAAGCTACAGAGACCACGAGGTACTAGACATTGCATTGAAAAGGGTAATCTCAATTATCTCAGGAGGTTTAATTTCTGTATCAGTCAGCATTTTCGTGTGTCCCATATGGGCCGGTGGTGATCTTCACAATCTAGAATCTAAAAATATTGAAAAACTAGGCAACTTTCTAGAAGGTTTTGGAGAGGAATATTTCGGGAGATCAGAGGGTGGAGAATCAAACAAATTATTTATGCAAGGATATAAAAGTGTTCTTACTTCAAAACAAGTTGAAGAAACTTTGGCCAATTTTGCAAGGTGGGAACCGTGCCATGGACGTTTCAGATTTCGTCATCCATGGCAACAATACTTGAAGATTGGAAACTTGTCAAGGCAGTGTGCCTATCGTATTGATGCCCTTAATGGCTTCCTTAATTCTGCCAAGACACCATTAGAAATGAGAGGCAAAATACCAGATCCATGCATCAAGATGAGCACAGAAGCAGGAAAGGCTTTAAAGGAATTAGCAATGGCAATCCATAAAATGATTCCACCATCTGCTGCAAACCCTCACATTGCCAAATCTAAGATTGCTGCCACCAACCTTAGGTCCATCATGAAAACAGGATTGTGGGAAGACACAAATCTCTTTGAGGTTATTCCTGTTCTGACTGTGGCTTCCCTATTGCTTCATGTGGTTTCTTGCACTGAGAAACTAGCAGAGTCAATACAAGAATTATCCACCCTAGCAAAATTTAAGAACCAAGACAGTGAATTTGTCCCAAAGAGTCCTCAACAGAAGGAAACTCCACAACCATGTTGTCACAACAGTGGACCACATCATGTTGTTACTATTAATTAA
>Glyma.12g188500.1.p sequence-type=predicted peptide transcript=Glyma.12g188500.1 locus=Glyma.12g188500 ID=Glyma.12g188500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALPSEFSAKVVDVMSQIKKVGKEDPRRVIHALKVALSITLVSAFYYVNPLYDGFGSSAMYAVFTVIVVSEFSVGATLGKGLNRGFATFLAGALGLGSYYLVHSISTEHIVEPILLGTLIYLITAGITYFRFLPQIKARYDYGLLVFNLTFCLVSVSSYRDHEVLDIALKRVISIISGGLISVSVSIFVCPIWAGGDLHNLESKNIEKLGNFLEGFGEEYFGRSEGGESNKLFMQGYKSVLTSKQVEETLANFARWEPCHGRFRFRHPWQQYLKIGNLSRQCAYRIDALNGFLNSAKTPLEMRGKIPDPCIKMSTEAGKALKELAMAIHKMIPPSAANPHIAKSKIAATNLRSIMKTGLWEDTNLFEVIPVLTVASLLLHVVSCTEKLAESIQELSTLAKFKNQDSEFVPKSPQQKETPQPCCHNSGPHHVVTIN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
