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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10230.1 | AT | lycopene cyclase | JGI | N/A | IEA |
| GO:0016117 | GO-bp | carotenoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016117 | GO-bp | carotenoid biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | JGI | N/A | IEA |
| PTHR10617 | Panther | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE | JGI | N/A | IEA |
| PTHR10617:SF31 | Panther | JGI | N/A | IEA | |
| PF05834 | PFAM | Lycopene cyclase protein | JGI | N/A | IEA |
| CAROTENOID-PWY | SoyCyc9 | superpathway of carotenoid biosynthesis in plants | Plant Metabolic Network | ISS | |
| PWY-6809 | SoyCyc9 | neoxanthin biosynthesis | Plant Metabolic Network | ISS | |
| PWY-695 | SoyCyc9 | abscisic acid biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-43834 | SoyCyc9-rxn | neoxanthin synthase | Plant Metabolic Network | ISS |
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Glyma.12g186300 not represented in the dataset |
Glyma.12g186300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g315200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
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>Glyma.12g186300.1 sequence-type=CDS polypeptide=Glyma.12g186300.1.p locus=Glyma.12g186300 ID=Glyma.12g186300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCAGAGGGGTGGGAAAAGGCATCGGGTTGGGTGTGTCACTTCCCGAATCCTATTTGTCTACATGTATCTGCCAATTACCAAACTCTATTATAGACAACACAACAAATCACCTTCCTCGTTTCTGCACAATTTCCTTGTACTTTTCTCCATCACTCAAATCAGAAAATCACCGCAAAAAATGGGGCACTATTTCATGTTATTTTCCCGCACCGCCTCTGTTGATCAAGCCTCACCAACCCCTCACCCCTCCATTCCCTCTTCCTCAAACCCATCACACAGTATCAAGAAAACTCATCAGAGGCGGCAAGAGGGTCCACAGCACCAGCAAGTTCGGAAACTTCCTTGACTTGAAACCCGAGAACAAACCTGAAGCCTTAAATTTTGACCTTCCATGGGTTAGTAGGAGGAAACTGAAGGAGAGATTGGTTGAAGGGTGTGTCTCCAATGGGGTTAGGTTTCACAAGGCAAAGGTGTGGCAAGTTGAGCACCAAGAGTTTGAGTCTAAAGGGAGTTTGGTTGTTGATGTTAGTGGATTTGGTAGTAGTTTTGTAGCATATGACAAGGTGAAAAACCATGGTTTTCAGATTGCTCATAGTGTTTTGGCTGAAGTGGATGATCACCCTTTTGATTTGGACAAGATGGTTTTGGTGGATTGGAGGGATTCTCATTTGGGGAATGAGCCCTACTTGAGAGCTAGTAGTTCAAGGTTCCCTACTTTCCTCTATGCAATGCCATTTAGTTCTAATTTGATATTTCTTGAAGAGACTTCCCTTGTGAGCCGTCCAGTGTTGTATTACATGGAAGTGAAGAGGAGGATGGTTGCAAGGCTAAGGCACTTAGGGATTAGAGTGAAGAGGGTTTTGACCCCCCAAGAAGTGATGGCTATTGGTAGCACTTCTGGGGTAGTACACCCTTCCACAGGGTACATGGTGGCTAGAACAATGGCTGTGGCTCCAGTTGTGGCTTTTGCTATAGCTGAGTGCCTTGGTTCCACCAGAATGATCAGAGGAAAACAGCTTTCTGGTAAAGTTTTGAATAGCATGTGGCCAATTGAGAACAGGCTAGTCAGGGAATTTTACTCTTATGGAATGGAGACTCTCTTGAAGGTTGACTTGAATGGAAACAGGAGTTTCTTTGATGCATTTTTTGACTTGAAACCTTATTATTGGCAAGGGTTCCTCTCTTCGAGGTTGACTTTGAATGAGCTTGTTTGGTTAAGCATATCACTGTTTGGACATGCCTCAAATCCATCTAGGTTTGATATTCTCACAAAGTGTCATGTTCCATTGGCTAAGATGATGGGCAATATCGCTTTGGAGTACATTGGATGA
>Glyma.12g186300.1.p sequence-type=predicted peptide transcript=Glyma.12g186300.1 locus=Glyma.12g186300 ID=Glyma.12g186300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MARGVGKGIGLGVSLPESYLSTCICQLPNSIIDNTTNHLPRFCTISLYFSPSLKSENHRKKWGTISCYFPAPPLLIKPHQPLTPPFPLPQTHHTVSRKLIRGGKRVHSTSKFGNFLDLKPENKPEALNFDLPWVSRRKLKERLVEGCVSNGVRFHKAKVWQVEHQEFESKGSLVVDVSGFGSSFVAYDKVKNHGFQIAHSVLAEVDDHPFDLDKMVLVDWRDSHLGNEPYLRASSSRFPTFLYAMPFSSNLIFLEETSLVSRPVLYYMEVKRRMVARLRHLGIRVKRVLTPQEVMAIGSTSGVVHPSTGYMVARTMAVAPVVAFAIAECLGSTRMIRGKQLSGKVLNSMWPIENRLVREFYSYGMETLLKVDLNGNRSFFDAFFDLKPYYWQGFLSSRLTLNELVWLSISLFGHASNPSRFDILTKCHVPLAKMMGNIALEYIG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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