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Report for Sequence Feature Glyma.12g179500

Feature Type:gene_model
Chromosome:Gm12
Start:33977725
stop:33980896
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g179500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16740.1AT terpene synthase 03 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0010333GO-mf terpene synthase activity EnsemblGenomesN/AIEA
GO:0010333GO-mf terpene synthase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity JGI N/AIEA
PF01397PFAM Terpene synthase, N-terminal domain JGI N/AIEA
PF03936PFAM Terpene synthase family, metal binding domain JGI N/AIEA
PWY-5725SoyCyc9 farnesene biosynthesis Plant Metabolic Network ISS
GN7V-64354SoyCyc9-rxn (Z,E)-α- farnesene synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.12g179500
LocusGene SymbolProtein Name
TPS27 terpene synthase 27

Expression Patterns of Glyma.12g179500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g179500 not represented in the dataset
Glyma.12g179500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g179500
ParalogEvidenceComments
Glyma.13g321100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.12g179500
>Glyma.12g179500.1 sequence-type=CDS polypeptide=Glyma.12g179500.1.p locus=Glyma.12g179500 ID=Glyma.12g179500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATCAGTCAGACACAAATCAATCGGCTCAAGAAGTTAATATAATTACAGAGATCATAAGAAGATTGGCAAATTATAAATCCAACATTTGGAAATATGATTTTCTGCAGTCACTTGCCAGTAAATATGATTTACTCAAAATCAACTTTTTAGATGAAAAAGGTAAAGTGATGAGAAAAAGCTCATATGTTAGCTATGGTAAAGATGTTGTGGGGCTTCTTGAGGCCTTACATTTGGGTTTAGAAGGAGAGAAGATCTTGGATGAGGCCAAAACTTGTGCCATAAATTCTCTGAAGCATGCTTTTTCTCCCAGTTCTATCAACCAATCTGATTTACAGTGGTTTGACGTCAAATGGAACGTGGAGCAATACAAAAAGGAGAAACACATGGACCCAATTTTTCTTGAATTAGCTAAATTAAATTTCAATATGATTCAGGCCAAACTTCAAATCGAGGTCAAGGAATTATCCAGGTGGTGGGAGAATCTTGGTATAAAAAAAGAGTTGAGCTTTGCAAGGATTAGGTTGGTTGAAAGCTTCATGTGTGCAGTAGGAGTTGCTTTTGAGCCAAAGTACAAATCTATCAAAAAATGGCTCACTAAAGTTATTATTTTTGTAATAATCCTCGATGATGTTTATGATATACACGCCTCATTTGAAGAGTTGAAGCCGTTCACAATGGCATTTGAGAGATGGGATGACAAAGAACTTGAAGAACTTCCAGAGTACATGAAAATTTGCGTCCATGCACTTAAAGATTGGACAGACTTTTGCAAAGCATTATACGTGGAAGCAAAAACCGCATCAAAAGTGGTTAACAAGGGATACATTCCATCGTTGCAAGAATATTTAAACAATGCTTGGATTTCATCTTCGGGGCCAGTAATTCTACTCCATTTATATTATGCTACAATGAATCAAGCAACGGATGTAGACAATTTTCTACACACATATGAAGATTTGGTCTACAATGCTGAAAGAGAAAGGGGTGATGCTGTTTCGTCAATCCTATGCTATATGAATCAAAAGGATGCTTCAGAGGAAAAAGCAAGAAAGCACATACAAGACATGATACACAAAGCATGGAAAAAGATGAATGGACATTATTGCTCTAATCGAGTTGCTTCAATGGAGCCATTTCTTACTCAAGCCATAAATGCAGCTCGTGTGGCCCATACCCTTAATCAAAATGTCGATGGCTTTAGTATCGAAGACCAAGATATCAAGAAACATATCTTATCACTGGTTGTTGAACCCCTTTAA
Predicted protein sequences of Glyma.12g179500
>Glyma.12g179500.1.p sequence-type=predicted peptide transcript=Glyma.12g179500.1 locus=Glyma.12g179500 ID=Glyma.12g179500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQSDTNQSAQEVNIITEIIRRLANYKSNIWKYDFLQSLASKYDLLKINFLDEKGKVMRKSSYVSYGKDVVGLLEALHLGLEGEKILDEAKTCAINSLKHAFSPSSINQSDLQWFDVKWNVEQYKKEKHMDPIFLELAKLNFNMIQAKLQIEVKELSRWWENLGIKKELSFARIRLVESFMCAVGVAFEPKYKSIKKWLTKVIIFVIILDDVYDIHASFEELKPFTMAFERWDDKELEELPEYMKICVHALKDWTDFCKALYVEAKTASKVVNKGYIPSLQEYLNNAWISSSGPVILLHLYYATMNQATDVDNFLHTYEDLVYNAERERGDAVSSILCYMNQKDASEEKARKHIQDMIHKAWKKMNGHYCSNRVASMEPFLTQAINAARVAHTLNQNVDGFSIEDQDIKKHILSLVVEPL*






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