Glyma.12g178900

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Report for Sequence Feature Glyma.12g178900

Feature Type:	gene_model
Chromosome:	Gm12
Start:	33869988
stop:	33872144
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g178900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28200.1	AT	C2H2-type zinc finger family protein	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
PTHR26374	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR26374:SF459	Panther		JGI	N/A	IEA

Proteins Associated with Glyma.12g178900

Locus	Gene Symbol	Protein Name
	ZFP3	C2H2-type zinc finger protein 3

Expression Patterns of Glyma.12g178900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g178900

Paralog	Evidence	Comments
Glyma.13g321900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g178900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g30270	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.12g178900

Limit To All Plant Sequences

>Glyma.12g178900.1 sequence-type=CDS polypeptide=Glyma.12g178900.1.p locus=Glyma.12g178900 ID=Glyma.12g178900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGCACAAATGGACATGGAGGAGCTTGTCTCATGTAACAACAACGATGCCACCAACATAGCCAAAGGGAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGTGCTGTTGTCGCTGCTACCACTATCACCACCACCACCACTGCTATCACCGCTATCACCACCGTCATGACATCTAGCTGTTCAAGTGCTTCTGCCGGTGGCGGTGGATCGTCTTCATCCACCACCTTTGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTAGCACAAGGAAGAGTAGGACGGGACCCTCCTCATCATCACAAGGACCTATGTGGTGATGTCAAGACAGAGAAGGGTAGCACCAAAGTTGATCATTTATATGTTTATGAGTGCAAAACATGCAGCCGAACATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGATGGAGGAGAAAAAGTTGTTATCACCACCACTGTTATTGCCACCACTGCCAGCTTCGTCTTCGTCACTATTTAATTTTGAGGAAGCAAAACAAAGTCACATGAAGAATATTATTAGCCCTTCTGTCTCCCTTCAATTAGGGTGTGGCATTAACAAGGTTGGTTTAAATTTCCATGGCAACAAGTCCAAGATTCATGAGTGTTCCATCTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTAACAATAATAACAATATTGTTCAGACAACAACAACAACAACAACTACTTCTAATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAGAGTTGGATCTTAACCTTCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGCGAATCCGAATTCTATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG

Predicted protein sequences of Glyma.12g178900

Limit To All Plant Sequences

>Glyma.12g178900.1.p sequence-type=predicted peptide transcript=Glyma.12g178900.1 locus=Glyma.12g178900 ID=Glyma.12g178900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLAQMDMEELVSCNNNDATNIAKGKRTKRRLRPLSPCAVVAATTITTTTTAITAITTVMTSSCSSASAGGGGSSSSTTFEEEEEDMANCLILLAQGRVGRDPPHHHKDLCGDVKTEKGSTKVDHLYVYECKTCSRTFPSFQALGGHRASHKKPKMEEKKLLSPPLLLPPLPASSSSLFNFEEAKQSHMKNIISPSVSLQLGCGINKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASNNNNNIVQTTTTTTTTSNGAVDVKPRNVLELDLNLPAPEDDLRDSKFQFPANPNSMMLSAAPALVGCHY*

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