SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.12g178500

Feature Type:gene_model
Chromosome:Gm12
Start:35307163
stop:35309155
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.12g178500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28160.1AT ATBHLH029,ATBHLH29,ATFIT1,BHLH029,FIT1,FRU JGI N/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR31945PantherFam TRANSCRIPTION FACTOR SCREAM2-RELATED JGI N/AIEA
PTHR31945:SF17PantherFam TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR JGI N/AIEA
PF00010Pfam Helix-loop-helix DNA-binding domain JGI N/AIEA

Proteins Associated with Glyma.12g178500
LocusGene SymbolProtein Name
BHLH57 bHLH transcription factor

Gene model name correspondences to Glyma.12g178500 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g30240 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g178500
>Glyma.12g178500.1 sequence-type=CDS polypeptide=Glyma.12g178500.1.p locus=Glyma.12g178500 id=Glyma.12g178500.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAACACGATGGATGTTCACCAAGACACACTGACGTACATGAATGATTTTGAGCTGTACGACTTCGTTGCTGATCCAAATTTTGATCAGTTCATCAATTTGTTCCGAGGGGAGAATGAAGATGCTAACTGTGATCACTTCGGTTCTGACCTTATCAATGATTGTTTTGCTAACAATCAGCAGCAGCTACTTTCATGTCCAGCAAACCCTTTTGATCAGAACAATAATAATAATGCTGTGAATGTCTATGATCCAAGCTCCACATTTAGCTCCTTCTCTTACTATGATAGGGAGCTCAAGGGGGAAGGAGGAGAAGAACTTGATGAAGAACATTCTTCTGGGACGATGACAACGACAACTAACAATGCTGTTGGCAAACCAAAAGTAAAAACTGATATGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCTTCTATAATTGGAGACGCAGCATCATATGTGCATGACCTTCAAGCTCGAGCTAGGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCTTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACTACCCCAAAAATGTGCAAGTGGCCCGTAATATTGGTCATCCAATCTGCAAGAAGATCATGCAGATGGAAATGTTTCAAGTGGAGGAAAGAGGGTACTATGCAAAAATAATGTGCAATAAAGTACAAGGGTTGGCTGCTTCACTGTACAGGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGATGACAGTTTTCTACTTACATTTACATTGAATGTAAAAGGAACTGAACCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGCTGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA
Predicted protein sequences of Glyma.12g178500
>Glyma.12g178500.1.p sequence-type=predicted peptide transcript=Glyma.12g178500.1 locus=Glyma.12g178500 id=Glyma.12g178500.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MNTMDVHQDTLTYMNDFELYDFVADPNFDQFINLFRGENEDANCDHFGSDLINDCFANNQQQLLSCPANPFDQNNNNNAVNVYDPSSTFSSFSYYDRELKGEGGEELDEEHSSGTMTTTTNNAVGKPKVKTDMSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAASYVHDLQARARKLKAEVAGLEASLLVSENYQGSINYPKNVQVARNIGHPICKKIMQMEMFQVEERGYYAKIMCNKVQGLAASLYRALESLAGFNVQNSNLATVDDSFLLTFTLNVKGTEPEINLPNLKLWVTAALLNQGFEFVASFPA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo