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Report for Sequence Feature Glyma.12g173700

Feature Type:gene_model
Chromosome:Gm12
Start:33046449
stop:33054373
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g173700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28470.1AT beta-galactosidase 8 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0009341GO-cc beta-galactosidase complex JGI N/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004565GO-mf beta-galactosidase activity EnsemblGenomesN/AIEA
GO:0004565GO-mf beta-galactosidase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding JGI N/AIEA
KOG0496 KOG Beta-galactosidase JGI N/AIEA
PTHR23421Panther BETA-GALACTOSIDASE RELATED JGI N/AIEA
PTHR23421:SF31Panther JGI N/AIEA
PF01301PFAM Glycosyl hydrolases family 35 JGI N/AIEA
PF02140PFAM Galactose binding lectin domain JGI N/AIEA
PF02837PFAM Glycosyl hydrolases family 2, sugar binding domain JGI N/AIEA
GN7V-52158SoyCyc9-rxn β-galactosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g173700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g173700
ParalogEvidenceComments
Glyma.13g327000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g173700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g29660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g173700
>Glyma.12g173700.1 sequence-type=CDS polypeptide=Glyma.12g173700.1.p locus=Glyma.12g173700 ID=Glyma.12g173700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACCGGCACAGATTGTGTTGGTTCTGTTTTGGTTGCTCTGCATTCACACTCCCAAGTTGTTCTGCGCCAATGTAGAGTATGATCACAGAGCATTGGTCATCGACGGCAAGCGCAGGGTCTTGATCTCTGGCTCCATTCATTACCCTCGTAGTACTCCAGAGATGTGGCCAGACCTTATTCAGAAATCCAAAGATGGAGGGTTGGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATGATTTTGATGGGAGGAAGGACTTGGTGAAATTTGTGAAGACAGTGGCTGCAGCTGGTCTCTATGTCCATCTCCGCATTGGTCCGTACGTGTGTGCTGAATGGAACTATGGTGGTTTCCCTGTTTGGCTGCACTTCATTCCGGGAATCAAGTTCCGAACTGACAATGAACCTTTCAAGGCAGAAATGAAGAGATTCACTGCCAAAATTGTGGATATGATCAAGCAAGAGAAGCTATATGCCTCCCAAGGAGGACCTGTTATTTTATCTCAGATTGAAAATGAGTATGGAAACATTGATACGGCCTACGGTGCTGCGGGTAAATCCTACATTAAGTGGGCAGCAACTATGGCTACATCTCTTGATACAGGGGTTCCATGGGTCATGTGTCTGCAAGCAGATGCTCCTGATCCAATTATTAATACATGGAATGGATTTTACGGCGATGAATTTACACCAAACTCTAACACAAAACCAAAAATGTGGACTGAGAATTGGAGTGGATGGTTTCTTGTGTTCGGTGGTGCTGTTCCTTACCGACCTGTGGAAGATCTTGCATTTGCCGTGGCACGCTTTTTCCAGCGAGGAGGAACATTTCAAAATTATTATATGTACCATGGAGGAACCAACTTTGACCGAGCTTCTGGTGGACCTTTCATTGCTACAAGTTATGATTATGATGCACCAATTGACGAGTATGGAATTATTAGACAGCCTAAGTGGGGCCACCTTAAAGAAGTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTGATAGCTACTGATCCAACAATTACATCCCTTGGTCCAAACCTAGAGGCTGCAGTTTACAAGACAGGATCTGTATGTGCGGCCTTCCTTGCTAACGTAGGCACCAAATCTGATGTAACAGTAAACTTCAGTGGCAATTCATATCACTTGCCTGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAGTGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTGCAATTTCAAGCTTTACAACTGAATCTTCAAAAGAAGATATTGGTTCTTCAGAAGCTTCTAGTACAGGATGGAGTTGGATTAGTGAACCAGTGGGTATTTCGAAGACCGATTCATTCTCACAAACTGGATTATTGGAGCAAATAAATACAACAGCTGATAAAAGTGATTACTTGTGGTACTCATTAAGCATTGATTATAAGGCTGATGCTAGTTCTCAAACTGTCCTTCACATTGAATCACTTGGTCATGCCCTTCATGCCTTTATTAATGGGAAGCTTGCAGGGAGTCAACCAGGCAACAGTGGCAAATATAAGTTCACTGTGGACATCCCTGTCACACTAGTCGCTGGAAAGAACACAATTGATCTCTTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCCTTTTTTGACACATGGGGAGTGGGGATCACTGGTCCAGTGATATTGAAAGGTTTTGCAAATGGCAACACGCTTGATCTCTCCTCCCAGAAGTGGACCTATCAGGTTGGCCTCCAAGGGGAAGATTTGGGTCTGTCTAGTGGGAGTTCGGGACAGTGGAATTTGCAATCTACCTTCCCTAAGAACCAACCATTGACTTGGTACAAGACAACTTTTTCTGCTCCATCCGGCAGTGATCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGCGAGGCTTGGGTTAATGGGCAACGCATCGGGCGATACTGGCCTACATATGTCGCTTCAGATGCTAGTTGCACGGACTCATGCAATTATAGAGGACCTTACAGTGCATCCAAATGTCGCAAGAATTGTGAAAAGCCATCACAGACACTATACCATGTACCGCGATCGTGGCTGAAACCAAGTGGCAACATTCTTGTATTGTTTGAGGAAAGGGGAGGTGATCCAACACAAATATCTTTTGTCACAAAACAGACAGAAAGTTTGTGTGCGCATGTATCCGATTCTCACCCACCACCTGTAGACTTGTGGAACTCAGAAACAGAATCAGGAAGAAAAGTAGGTCCTGTACTATCACTCACCTGCCCTCATGATAACCAAGTCATCTCTTCCATTAAATTTGCAAGCTATGGAACACCCCTTGGAACCTGTGGTAACTTCTACCATGGACGATGCAGCAGCAACAAGGCTCTATCTATTGTGCAGAAGGCCTGCATTGGATCAAGCAGTTGTAGTGTTGGAGTATCAAGTGACACATTCGGAGACCCTTGTAGAGGAATGGCAAAGAGTTTAGCAGTTGAAGCTACTTGTGCATAG
Predicted protein sequences of Glyma.12g173700
>Glyma.12g173700.1.p sequence-type=predicted peptide transcript=Glyma.12g173700.1 locus=Glyma.12g173700 ID=Glyma.12g173700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPAQIVLVLFWLLCIHTPKLFCANVEYDHRALVIDGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRGQYDFDGRKDLVKFVKTVAAAGLYVHLRIGPYVCAEWNYGGFPVWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDMIKQEKLYASQGGPVILSQIENEYGNIDTAYGAAGKSYIKWAATMATSLDTGVPWVMCLQADAPDPIINTWNGFYGDEFTPNSNTKPKMWTENWSGWFLVFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRASGGPFIATSYDYDAPIDEYGIIRQPKWGHLKEVHKAIKLCEEALIATDPTITSLGPNLEAAVYKTGSVCAAFLANVGTKSDVTVNFSGNSYHLPAWSVSILPDCKSVVLNTAKINSASAISSFTTESSKEDIGSSEASSTGWSWISEPVGISKTDSFSQTGLLEQINTTADKSDYLWYSLSIDYKADASSQTVLHIESLGHALHAFINGKLAGSQPGNSGKYKFTVDIPVTLVAGKNTIDLLSLTVGLQNYGAFFDTWGVGITGPVILKGFANGNTLDLSSQKWTYQVGLQGEDLGLSSGSSGQWNLQSTFPKNQPLTWYKTTFSAPSGSDPVAIDFTGMGKGEAWVNGQRIGRYWPTYVASDASCTDSCNYRGPYSASKCRKNCEKPSQTLYHVPRSWLKPSGNILVLFEERGGDPTQISFVTKQTESLCAHVSDSHPPPVDLWNSETESGRKVGPVLSLTCPHDNQVISSIKFASYGTPLGTCGNFYHGRCSSNKALSIVQKACIGSSSCSVGVSSDTFGDPCRGMAKSLAVEATCA*






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