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Report for Sequence Feature Glyma.12g173600

Feature Type:gene_model
Chromosome:Gm12
Start:33039481
stop:33046083
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g173600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G45240.1AT geminivirus rep interacting kinase 1 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0018105GO-bp peptidyl-serine phosphorylation EnsemblGenomesN/AIEA
GO:0018107GO-bp peptidyl-threonine phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0583 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24347Panther SERINE/THREONINE-PROTEIN KINASE JGI N/AIEA
PTHR24347:SF40Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Expression Patterns of Glyma.12g173600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g173600
ParalogEvidenceComments
Glyma.13g326900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g173600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g29640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g173600
>Glyma.12g173600.1 sequence-type=CDS polypeptide=Glyma.12g173600.1.p locus=Glyma.12g173600 ID=Glyma.12g173600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTTGGATTTGTCCAAAAACCAAGACCGCGTCGGGCTAAACGTAGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGTGAAGAGACATATAGTGGTGATGTTACTAGTAACTGCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTGAACTTCAGAGCTGAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTGCGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGCGAGGGTACAGGTCATCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACTGTAAAAATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGAGGACATTAACCCCCAGTTAAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGACGATGGGCCAATTCCCGGGTACTTATGTTGGTGCAAACGTAAGAGCATGGTTACTGAAGATTCTGATGGGAGCGATATACTTGATTGA
Predicted protein sequences of Glyma.12g173600
>Glyma.12g173600.1.p sequence-type=predicted peptide transcript=Glyma.12g173600.1 locus=Glyma.12g173600 ID=Glyma.12g173600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDYKSFSFSKMMGCCGCFGFVQKPRPRRAKRSISNLLSQGLLLDGETEGEETYSGDVTSNCTSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCKLDRSEDENGNKMINEYVREYKIGCGSYGKVALYRSSVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGHPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPEDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGDDGPIPGYLCWCKRKSMVTEDSDGSDILD*






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