SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60640.1 | AT | PDI-like 1-4 | JGI | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | EnsemblGenomes | N/A | IEA |
| GO:0034976 | GO-bp | response to endoplasmic reticulum stress | EnsemblGenomes | N/A | IEA |
| GO:0045454 | GO-bp | cell redox homeostasis | EnsemblGenomes | N/A | IEA |
| GO:0045454 | GO-bp | cell redox homeostasis | JGI | N/A | IEA |
| GO:0005623 | GO-cc | cell | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003756 | GO-mf | protein disulfide isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| KOG0190 | KOG | Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) | JGI | N/A | IEA |
| PTHR18929 | Panther | PROTEIN DISULFIDE ISOMERASE | JGI | N/A | IEA |
| PTHR18929:SF32 | Panther | JGI | N/A | IEA | |
| PF00085 | PFAM | Thioredoxin | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PDIL-2 | protein disulfide isomerase-like protein |
|
Glyma.12g172800 not represented in the dataset |
Glyma.12g172800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g326200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g29550 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g172800.1 sequence-type=CDS polypeptide=Glyma.12g172800.1.p locus=Glyma.12g172800 ID=Glyma.12g172800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTTGCGGAACGGTGGCGTGATAAAGAGGATTGATTTCCGTTTTGTTCAGCCCGCAGTTGAAAGTCAACCAAGTCTCGTAGCACACACTCACACACTCAGATCTCTCTTCTCTTTCTGCAATTCCATTGTTGTTCTCTTCACTCTCACAATGCGAATCCTCGTTGTGCTCTCTCTCGCCACCCTCCTCCTCTTCTCCTCCCTCTTTCTCACCCTCTGCGACGACCTCACCGACGACGAGGACCTCGGCTTCCTCGACGAGCCCTCCGCCGCGCCGGAGCACGGCCACTACCACGACGATGACGCCAATTTCGGCGACTTCGAGGAGGACCCGGAGGCGTACAAGCAGCCCGAGGTGGACGAGAAGGACGTCGTCATTTTGAAGGAGAAGAACTTCACCGACACCGTCAAGAGCAACCGCTTCGTAATGGTCGAGTTCTACGCGCCCTGGTGCGGCCACTGCCAGGCCCTCGCCCCCGAATACGCCGCCGCCGCAACGGAGCTCAAGGGCGAAGACGTAATTTTGGCGAAAGTGGATGCCACGGAAGAGAATGAATTGGCGCAGCAGTATGATGTTCAGGGTTTCCCTACTGTCTACTTCTTCGTTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAAGATGCTATAATGACGTGGATTAAGAAAAAGATCGGACCTGGTATATACAACTTGACTACAGTGGAGGATGCTCAACGCATCTTGACCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTGCTGCTTCAAGACTTGAGGATGATGTCAATTTTTATCAAACTGTGGATCCTGATGTGGCAAAGCTTTTCCATATTGACCCAGATGTTAAGCGCCCAGCTTTGATCCTCGTCAAGAAAGAGGAGGAAAAACTTAACCACTTTGATGGCAAATTTGAGAAGTCGGAAATAGCAGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTAAAGAAGCTGCAAAATCTTTCAAGGGAAAGTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGAATGCTCCAAAAGTACTTGGGTACACTGGGAATGATGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTGCTGACAAAATTAAGGCATTTGGGGACGATTTCCTTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAGCCAATATACGACAAGCTTGCAAAACATCTTCGTAATATTGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTGATGCCAAGGGGAGCTCTGATGCCAAAGAGAGCCAGAGTAGTGATGTGAAGGATGAATTATGA
>Glyma.12g172800.1.p sequence-type=predicted peptide transcript=Glyma.12g172800.1 locus=Glyma.12g172800 ID=Glyma.12g172800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALRNGGVIKRIDFRFVQPAVESQPSLVAHTHTLRSLFSFCNSIVVLFTLTMRILVVLSLATLLLFSSLFLTLCDDLTDDEDLGFLDEPSAAPEHGHYHDDDANFGDFEEDPEAYKQPEVDEKDVVILKEKNFTDTVKSNRFVMVEFYAPWCGHCQALAPEYAAAATELKGEDVILAKVDATEENELAQQYDVQGFPTVYFFVDGIHKPYNGQRTKDAIMTWIKKKIGPGIYNLTTVEDAQRILTNETKVVLGFLNSLVGPESEELAAASRLEDDVNFYQTVDPDVAKLFHIDPDVKRPALILVKKEEEKLNHFDGKFEKSEIADFVFSNKLPLVTIFTRESAPSVFENPIKKQLLLFATSNDSEKLIPAFKEAAKSFKGKLIFVYVEMDNEDVGKPVSEYFGISGNAPKVLGYTGNDDGKKFVLDGEVTADKIKAFGDDFLEDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLRNIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTSDAKGSSDAKESQSSDVKDEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
