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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61010.1 | AT | cleavage and polyadenylation specificity factor 73-I | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG1137 | KOG | mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) | JGI | N/A | IEA |
| PTHR11203 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR | JGI | N/A | IEA |
| PTHR11203:SF11 | Panther | INTEGRATOR COMPLEX SUBUNIT 11 | JGI | N/A | IEA |
| PF00753 | PFAM | Metallo-beta-lactamase superfamily | JGI | N/A | IEA |
| PF07521 | PFAM | RNA-metabolising metallo-beta-lactamase | JGI | N/A | IEA |
| PF10996 | PFAM | Beta-Casp domain | JGI | N/A | IEA |
| PF11718 | PFAM | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | JGI | N/A | IEA |
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Glyma.12g168900 not represented in the dataset |
Glyma.12g168900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g188800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g29031 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g168900.1 sequence-type=CDS polypeptide=Glyma.12g168900.1.p locus=Glyma.12g168900 ID=Glyma.12g168900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATAATTGTACGGCGAAGAGACGTGAGAATGCGAGGAGCAGCAGAGAGGAAGATCAACTGATAGTGACTCCATTGGGCGCTGGAAATGAAGTGGGTCGTTCATGCGTCTACATGTCCTACAAAGGCAAGACGGTCTTGTTCGATTGTGGAATACACCCAGCTTACTCTGGCATGGCTGCTTTGCCCTATTTCGACGAGATTGACCCTTCCACAGTCGATGTTCTTCTCATCACTCACTTTCACTTGGATCATGCTGCTTCCTTGCCCTATTTTCTCGAGAAAACCACCTTCCGAGGCCGTGTTTTCATGACCTACGCCACCAAGGCCATTTACAAGCTCCTTTTGTCTGATTTTGTCAAGGTCAGCAAGGTCTCCGTCGAAGACATGCTTTTTGACGAACAGGACATCAACCGCTCCATGGATAAAATTGAGGTTATTGATTTTCATCAGACAGTAGAAGTCAATGGTATTAGATTCTGGTGTTATACTGCAGGCCATGTCCTTGGTGCTGCTATGTTCATGGTTGACATAGCCGGTGTTCGAGTGCTTTACACCGGAGACTATTCACGTGAGGAAGACCGCCATCTCCGAGCTGCTGAGACCCCACAGTTCTCCCCTGATGTATGCATTATAGAATCCACCTATGGTGTACAGCACCATCAGCCTCGCCACACACGCGAAAAACGCTTCACTGATGTTATCCACTCAACCATTTCTCAAGGGGGTCGTGTGTTGATTCCAGCATTTGCCCTTGGCCGTGCACAGGAGCTCCTCCTTATCCTTGATGAATATTGGGCAAATCATCCTGAACTCCAGAATATACCCATCTATTATGCTTCTCCACTTGCAAAAAAATGTTTGACTGTGTATGAAACATACACCCTTTCCATGAATGACAGGATCCAGAATGCAAAGTCAAATCCGTTTTCCTTTAAGCACGTATCGGCTTTAAGTAGCATTGAAGTTTTCAAAGATGTAGGACCATCTGTGGTGATGGCAAGCCCTGGTGGACTTCAGAGTGGCTTGTCACGACAATTATTTGATATGTGGTGCTCTGATAAGAAAAATTCTTGTGTTTTACCAGGGTATGTAGTTGAAGGGACATTGGCAAAAACCATCATCAATGAGCCCAAGGAAGTTACTCTCATGAATGGACTCACTGCACCTCTTAACATGCAGGTGCACTACATTTCCTTTTCTGCTCATGCTGACTCTGCTCAAACAAGTGCGTTCTTAGAAGAGCTCAATCCTCCTAACATAATTCTTGTTCATGGAGAAGCTAATGAGATGGGCAGGCTCAAGCAGAAGCTCATAAGTCAATTTGCTGATCGCAACACTAAAATTCTTACTCCAAAAAACTGTCAATCTGTTGAAATGTATTTCAATTCGCAGAAAATGGCAAAAACCATAGGGAAGCTGGCTGAAAAAACACCAGAAGTTGGTGAAACTGTCAGTGGTTTGCTTGTAAAAAAAGGCTTCACATATCAGATTATGGCAGCTGATGATCTCCATGTCTTTTCACAACTATCAACAGCAAACATTACTCAGAGGATTACCATCCCTTATTCAGGTGCCTTTAATGTCATACAGCATAGACTCAAACAGATATATGAAAGTGTAGCTCAGTCAGTGGATGAAGAATCTGGAGTTCCCACATTGCAAGTCCATGAGTGTGTTACTGTGAAACATGAATCTGAAAAGCATGTCTCCTTGCATTGGGCCTCTGATCCCATGAGTGACATGGTATCTGATTCAATTGTTGCTCTGGTTTTAAATATCAACCGCGATGTCCCAAAAATAGTGAATGAATCTGATGCCATTAAGATTGAGGAAGAGAATGAGAAAAAGGCAGAGAAGGTTATGCAAGCCCTCCTCGTTTCACTCTTTGGAGATGTGAAGGTAGGTGAAAACGGAAAATTGATAATTAACATTGATGGGAATGTAGCAGAGCTAAACAAAGAAAGTGGGGAAGTTGAGAGTGAAAATGAAGGTCTCAAGGAAAGAGTAAGAACAGCATTCCGGCGCATTCAAAGTTCTGTGAAGCCAATTCCTGTTTCTGCGCCATAG
>Glyma.12g168900.1.p sequence-type=predicted peptide transcript=Glyma.12g168900.1 locus=Glyma.12g168900 ID=Glyma.12g168900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNNCTAKRRENARSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRIQNAKSNPFSFKHVSALSSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANEMGRLKQKLISQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAADDLHVFSQLSTANITQRITIPYSGAFNVIQHRLKQIYESVAQSVDEESGVPTLQVHECVTVKHESEKHVSLHWASDPMSDMVSDSIVALVLNINRDVPKIVNESDAIKIEEENEKKAEKVMQALLVSLFGDVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVRTAFRRIQSSVKPIPVSAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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