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Report for Sequence Feature Glyma.12g163100

Feature Type:gene_model
Chromosome:Gm12
Start:31278495
stop:31278734
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g163100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
GO:0006284GO-bp base-excision repair EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003906GO-mf DNA-(apurinic or apyrimidinic site) endonuclease activity EnsemblGenomesN/AIEA
GO:0008311GO-mf double-stranded DNA 3'-5' exodeoxyribonuclease activity EnsemblGenomesN/AIEA
PF03372PFAM Endonuclease/Exonuclease/phosphatase family JGI N/AIEA

Expression Patterns of Glyma.12g163100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g163100 not represented in the dataset
Glyma.12g163100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g163100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g27894 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g163100
>Glyma.12g163100.1 sequence-type=CDS polypeptide=Glyma.12g163100.1.p locus=Glyma.12g163100 ID=Glyma.12g163100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATTATATCATATAATATAAGGGGATTGGAGAGGGGGGTAATGTTGGCAGTAATAAGAATAATGGTAAAAAGAGAAAGAATAAATATCTTATGTCTACAAGAGACTAAGAGGGAGCAGGTTGATAAGGCTGTATGCCAAGCCTTGTGGGGTGATGCAGATGTTAGTTGGGAAATGCAGCCATCTTGCAATAGTCCGGGTGGAATTTTATGCATATGGAGTCAAAAAAAGATTTAG
Predicted protein sequences of Glyma.12g163100
>Glyma.12g163100.1.p sequence-type=predicted peptide transcript=Glyma.12g163100.1 locus=Glyma.12g163100 ID=Glyma.12g163100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIISYNIRGLERGVMLAVIRIMVKRERINILCLQETKREQVDKAVCQALWGDADVSWEMQPSCNSPGGILCIWSQKKI*






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