Glyma.12g161300

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Report for Sequence Feature Glyma.12g161300

Feature Type:	gene_model
Chromosome:	Gm12
Start:	29898332
stop:	29906466
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g161300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14940.1	AT	phosphoenolpyruvate carboxylase 3	JGI	N/A	IEA
GO:0006099	GO-bp	tricarboxylic acid cycle	EnsemblGenomes	N/A	IEA
GO:0006099	GO-bp	tricarboxylic acid cycle	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0015977	GO-bp	carbon fixation	EnsemblGenomes	N/A	IEA
GO:0015977	GO-bp	carbon fixation	JGI	N/A	IEA
GO:0015979	GO-bp	photosynthesis	EnsemblGenomes	N/A	IEA
GO:0048366	GO-bp	leaf development	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0048046	GO-cc	apoplast	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008964	GO-mf	phosphoenolpyruvate carboxylase activity	EnsemblGenomes	N/A	IEA
GO:0008964	GO-mf	phosphoenolpyruvate carboxylase activity	JGI	N/A	IEA
GO:0016829	GO-mf	lyase activity	EnsemblGenomes	N/A	IEA
PF00311	PFAM	Phosphoenolpyruvate carboxylase	JGI	N/A	IEA
PWY-6549	SoyCyc9	L-glutamine biosynthesis III	Plant Metabolic Network		ISS
PWYQT-4429	SoyCyc9	CO₂ fixation into oxaloacetate (anaplerotic)	Plant Metabolic Network		ISS
GN7V-48672	SoyCyc9-rxn	phosphoenolpyruvate carboxylase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.12g161300

Locus	Gene Symbol	Protein Name
	PEPC1	phosphoenolpyruvate carboxylase
	PEPC16	phosphoenolpyruvate carboxylase
	PEPC6	Phosphoenolpyruvate carboxylase6 gene
	PPC16	phosphoenolpyruvate carboxylase
	PEPC6	Phosphoenolpyruvate carboxylase gene 6
	ppc16	Phosphoenolpyruvate carboxylase isoform

Expression Patterns of Glyma.12g161300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g161300 not represented in the dataset	Glyma.12g161300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.12g161300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g09810	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.12g161300

Limit To All Plant Sequences

>Glyma.12g161300.1 sequence-type=CDS polypeptide=Glyma.12g161300.1.p locus=Glyma.12g161300 ID=Glyma.12g161300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAACAGGAACTTGGAAAAGATGGCATCGATTGATGCTCAGCTTCGGCTGTTGGTTCCGGCCAAAGTGAGTGAGGATGACAAACTGGTTGAGTATGATGCTTTGCTTTTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAAGAAACGGTTCAAGAGGTGTATGAGCTTTCTGCTGAGTATGAAGGTAAGCATGACCCAAAGAAACTAGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTGGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCCGAAGAGGTCCAAATTGCCCACAGTCGAAGGAACAAGTTGAAGAAAGGTGATTTTGCTGATGAAAACAATGCCACCACTGAATCAGACATTGAAGAAACTCTAAAGAAACTTGTGGTGGATATGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTTAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCACATTTCTACGTCGTGTTGATACAGCTTTGAAGAATATAGGGATCAACGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTACTCCCAGATAGAGGATCTTATGTTTGAGCTGTCAATGTGGCGCTGCAATGACGAGCTACGTGTCCGTGCAGATGAACTTAACAGGTCTTCCAAGAAAAATTCAGTCGCAAAACACTACATAGAATTTTGGAAAGCCATTCCTCCAAATGAACCATATCGTGTGCTACTGGGTGAAGTAAGGAATAGGCTTTACCAGACTCGTGAACGCTCACGCCATTTGCTAGCTCACGGATACTCTGACATTCCAGAGGAAGAGACTTTTACCAATGTTGAGGAGTTCTTGGAACCCCTTGAACTCTGTTACAGATCACTCTGTGCTTGTGGCGATCGTGCAATTGCCGATGGAAGCCTTCTAGATTTCTTGAGACAAGTCTCTACTTTCGGACTCTCCCTAGTGAGGCTTGACATAAGGCAAGAGTCAGACCGCCACACAGACGTCTTAGACGCCATCACCAAACATTTAGAAATAGGCTCATACCAGGAATGGTCGGAGGAAAAACGGCAGCAATGGCTTTTATCTGAGTTGAGTGGCAAACGGCCCCTATTCGGCCCTGATCTTCCCCAAACCGAAGAAATCAGAGACGTGTTGGAGACATTCCATGTCATAGCAGAGCTTCCACTAGACAACTTTGGAGCATACATCATCTCAATGGCAACTGCACCTTCTGATGTGCTTGCAGTTGAGCTTCTGCAGCGCGAATGCCATGTCAAGCATCCACTAAGAGTTGTGCCATTGTTTGAGAAGCTAGCTGATCTAGAAGCAGCACCGGCCGCGTTGGCGCGATTGTTCTCTGTAGACTGGTACAGAAACAGGATCAATGGGAAGCAGGAAGTGATGATAGGCTATTCTGATTCTGGCAAAGATGCTGGAAGGTTTTCAGCTGCATGGCAGCTGTATAAGGCTCAGGAGGAGCTTATAATGGTGGCTAAGCAGTATGGTGTGAAGCTGACAATGTTCCATGGTCGTGGAGGGACAGTTGGAAGAGGAGGTGGTCCAACTCACCTTGCTATTCTGTCTCAGCCTCCTGAAACCATTCATGGATCGCTGCGCGTGACTGTCCAAGGTGAAGTTATTGAGCAATCGTTTGGAGAGCAGCACTTGTGCTTCAGAACGCTTCAAAGGTTCACTGCAGCTACTCTAGAACATGGAATGCACCCTCCAATTTCTCCTAAACCGGAATGGAGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGATTTGTTGAGTATTTCCGCCTGGCCACACCTGAGTTGGAGTACGGGAGGATGAACATTGGAAGTCGACCAGCAAAGAGGAGGCCAAGTGGAGGTATTGAGACACTCCGTGCCATACCTTGGATCTTTGCCTGGACACAAACAAGGTTCCATCTTCCAGTGTGGCTAGGCTTTGGTGCAGCATTCAAACATGTTATTGAGAAGGATGTTAGGAATATTCATGTGCTGCAGGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGGATAGCTGCTCTTTATGATAGGCTCCTTGTTTCAGAGGATCTGTGGTCATTTGGGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCTACACGTTGAAACGTATCCGTGATCCAAACTATAATGTGAAGCTGCGCCCTCACATCTCCAAAGAGTCTATAGAGATAAGTAAACCTGCTGATGAACTTATAACACTTAACCCAACAAGTGAATATGCACCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGCTTGCAAAACACTGGCTAA

Predicted protein sequences of Glyma.12g161300

Limit To All Plant Sequences

>Glyma.12g161300.1.p sequence-type=predicted peptide transcript=Glyma.12g161300.1 locus=Glyma.12g161300 ID=Glyma.12g161300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHSRRNKLKKGDFADENNATTESDIEETLKKLVVDMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSKKNSVAKHYIEFWKAIPPNEPYRVLLGEVRNRLYQTRERSRHLLAHGYSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLETFHVIAELPLDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIMVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTMYEETKELLLQVAGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG*

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