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Report for Sequence Feature Glyma.12g161300

Feature Type:gene_model
Chromosome:Gm12
Start:29898332
stop:29906466
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g161300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14940.1AT phosphoenolpyruvate carboxylase 3 JGI N/AIEA
GO:0006099GO-bp tricarboxylic acid cycle EnsemblGenomesN/AIEA
GO:0006099GO-bp tricarboxylic acid cycle JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0015977GO-bp carbon fixation EnsemblGenomesN/AIEA
GO:0015977GO-bp carbon fixation JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0048366GO-bp leaf development EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0048046GO-cc apoplast EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008964GO-mf phosphoenolpyruvate carboxylase activity EnsemblGenomesN/AIEA
GO:0008964GO-mf phosphoenolpyruvate carboxylase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
PF00311PFAM Phosphoenolpyruvate carboxylase JGI N/AIEA
PWY-6549SoyCyc9 L-glutamine biosynthesis III Plant Metabolic Network ISS
PWYQT-4429SoyCyc9 CO2 fixation into oxaloacetate (anaplerotic) Plant Metabolic Network ISS
GN7V-48672SoyCyc9-rxn phosphoenolpyruvate carboxylase Plant Metabolic Network ISS

Proteins Associated with Glyma.12g161300
LocusGene SymbolProtein Name
PEPC1 phosphoenolpyruvate carboxylase
PEPC16 phosphoenolpyruvate carboxylase
PEPC6 Phosphoenolpyruvate carboxylase6 gene
PPC16 phosphoenolpyruvate carboxylase
PEPC6 Phosphoenolpyruvate carboxylase gene 6
ppc16 Phosphoenolpyruvate carboxylase isoform

Expression Patterns of Glyma.12g161300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g161300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g09810 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g161300
>Glyma.12g161300.1 sequence-type=CDS polypeptide=Glyma.12g161300.1.p locus=Glyma.12g161300 ID=Glyma.12g161300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAACAGGAACTTGGAAAAGATGGCATCGATTGATGCTCAGCTTCGGCTGTTGGTTCCGGCCAAAGTGAGTGAGGATGACAAACTGGTTGAGTATGATGCTTTGCTTTTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAAGAAACGGTTCAAGAGGTGTATGAGCTTTCTGCTGAGTATGAAGGTAAGCATGACCCAAAGAAACTAGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTGGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCCGAAGAGGTCCAAATTGCCCACAGTCGAAGGAACAAGTTGAAGAAAGGTGATTTTGCTGATGAAAACAATGCCACCACTGAATCAGACATTGAAGAAACTCTAAAGAAACTTGTGGTGGATATGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTTAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCACATTTCTACGTCGTGTTGATACAGCTTTGAAGAATATAGGGATCAACGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTACTCCCAGATAGAGGATCTTATGTTTGAGCTGTCAATGTGGCGCTGCAATGACGAGCTACGTGTCCGTGCAGATGAACTTAACAGGTCTTCCAAGAAAAATTCAGTCGCAAAACACTACATAGAATTTTGGAAAGCCATTCCTCCAAATGAACCATATCGTGTGCTACTGGGTGAAGTAAGGAATAGGCTTTACCAGACTCGTGAACGCTCACGCCATTTGCTAGCTCACGGATACTCTGACATTCCAGAGGAAGAGACTTTTACCAATGTTGAGGAGTTCTTGGAACCCCTTGAACTCTGTTACAGATCACTCTGTGCTTGTGGCGATCGTGCAATTGCCGATGGAAGCCTTCTAGATTTCTTGAGACAAGTCTCTACTTTCGGACTCTCCCTAGTGAGGCTTGACATAAGGCAAGAGTCAGACCGCCACACAGACGTCTTAGACGCCATCACCAAACATTTAGAAATAGGCTCATACCAGGAATGGTCGGAGGAAAAACGGCAGCAATGGCTTTTATCTGAGTTGAGTGGCAAACGGCCCCTATTCGGCCCTGATCTTCCCCAAACCGAAGAAATCAGAGACGTGTTGGAGACATTCCATGTCATAGCAGAGCTTCCACTAGACAACTTTGGAGCATACATCATCTCAATGGCAACTGCACCTTCTGATGTGCTTGCAGTTGAGCTTCTGCAGCGCGAATGCCATGTCAAGCATCCACTAAGAGTTGTGCCATTGTTTGAGAAGCTAGCTGATCTAGAAGCAGCACCGGCCGCGTTGGCGCGATTGTTCTCTGTAGACTGGTACAGAAACAGGATCAATGGGAAGCAGGAAGTGATGATAGGCTATTCTGATTCTGGCAAAGATGCTGGAAGGTTTTCAGCTGCATGGCAGCTGTATAAGGCTCAGGAGGAGCTTATAATGGTGGCTAAGCAGTATGGTGTGAAGCTGACAATGTTCCATGGTCGTGGAGGGACAGTTGGAAGAGGAGGTGGTCCAACTCACCTTGCTATTCTGTCTCAGCCTCCTGAAACCATTCATGGATCGCTGCGCGTGACTGTCCAAGGTGAAGTTATTGAGCAATCGTTTGGAGAGCAGCACTTGTGCTTCAGAACGCTTCAAAGGTTCACTGCAGCTACTCTAGAACATGGAATGCACCCTCCAATTTCTCCTAAACCGGAATGGAGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGATTTGTTGAGTATTTCCGCCTGGCCACACCTGAGTTGGAGTACGGGAGGATGAACATTGGAAGTCGACCAGCAAAGAGGAGGCCAAGTGGAGGTATTGAGACACTCCGTGCCATACCTTGGATCTTTGCCTGGACACAAACAAGGTTCCATCTTCCAGTGTGGCTAGGCTTTGGTGCAGCATTCAAACATGTTATTGAGAAGGATGTTAGGAATATTCATGTGCTGCAGGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGGATAGCTGCTCTTTATGATAGGCTCCTTGTTTCAGAGGATCTGTGGTCATTTGGGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCTACACGTTGAAACGTATCCGTGATCCAAACTATAATGTGAAGCTGCGCCCTCACATCTCCAAAGAGTCTATAGAGATAAGTAAACCTGCTGATGAACTTATAACACTTAACCCAACAAGTGAATATGCACCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGCTTGCAAAACACTGGCTAA
Predicted protein sequences of Glyma.12g161300
>Glyma.12g161300.1.p sequence-type=predicted peptide transcript=Glyma.12g161300.1 locus=Glyma.12g161300 ID=Glyma.12g161300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHSRRNKLKKGDFADENNATTESDIEETLKKLVVDMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSKKNSVAKHYIEFWKAIPPNEPYRVLLGEVRNRLYQTRERSRHLLAHGYSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLETFHVIAELPLDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIMVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTMYEETKELLLQVAGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG*






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