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Report for Sequence Feature Glyma.12g158800

Feature Type:gene_model
Chromosome:Gm12
Start:26882854
stop:26888267
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g158800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G22140.2AT PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein JGI N/AIEA
GO:0006342GO-bp chromatin silencing EnsemblGenomesN/AIEA
GO:0031507GO-bp heterochromatin assembly EnsemblGenomesN/AIEA
GO:0000785GO-cc chromatin EnsemblGenomesN/AIEA
GO:0005677GO-cc chromatin silencing complex EnsemblGenomesN/AIEA
GO:0000976GO-mf transcription regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003682GO-mf chromatin binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR12505Panther PHD FINGER TRANSCRIPTION FACTOR JGI N/AIEA
PTHR12505:SF8Panther JGI N/AIEA
PF00628PFAM PHD-finger JGI N/AIEA
PF01426PFAM BAH domain JGI N/AIEA

Expression Patterns of Glyma.12g158800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g158800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g20180 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g158800
>Glyma.12g158800.1 sequence-type=CDS polypeptide=Glyma.12g158800.1.p locus=Glyma.12g158800 ID=Glyma.12g158800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGGTGGAGCCAAAGCGGCGGAAGAGATGA
Predicted protein sequences of Glyma.12g158800
>Glyma.12g158800.1.p sequence-type=predicted peptide transcript=Glyma.12g158800.1 locus=Glyma.12g158800 ID=Glyma.12g158800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKTRPGRKDVDSYTIRGTSKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASLGADGKVEPKRRKR*






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