SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.12g158600

Feature Type:gene_model
Chromosome:Gm12
Start:26777394
stop:26782856
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g158600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54080.1AT homogentisate 1,2-dioxygenase JGI N/AIEA
GO:0006559GO-bp L-phenylalanine catabolic process EnsemblGenomesN/AIEA
GO:0006559GO-bp L-phenylalanine catabolic process JGI N/AIEA
GO:0006570GO-bp tyrosine metabolic process EnsemblGenomesN/AIEA
GO:0006570GO-bp tyrosine metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004411GO-mf homogentisate 1,2-dioxygenase activity EnsemblGenomesN/AIEA
GO:0004411GO-mf homogentisate 1,2-dioxygenase activity JGI N/AIEA
KOG1417 KOG Homogentisate 1,2-dioxygenase JGI N/AIEA
PTHR11056Panther HOMOGENTISATE 1,2-DIOXYGENASE JGI N/AIEA
PF04209PFAM homogentisate 1,2-dioxygenase JGI N/AIEA
GN7V-67858SoyCyc9-rxn homogentisate oxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.12g158600
LocusGene SymbolProtein Name
HGO1 homogentisate 1,2-dioxygenase

Expression Patterns of Glyma.12g158600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g158600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g20220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g158600
>Glyma.12g158600.2 sequence-type=transcript locus=Glyma.12g158600 ID=Glyma.12g158600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGACAAACCAGACAAACACTACCATGTTGCTATATTACGATTCGGTGAATCATGGAGAACCCAATCGACGGTGGCGAGTTCGTGTACCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGTGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGCCTCTACGCCGAGCAAATCTCTGGCACCTCCTTCACCTCCCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAGCCATCGGTGACTCACGAACCGTTCAAGCCTAGGGTACCTGGTAATGGCAGAATTTTGAGTGAGTTTAACAACTCCAACAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCTTGGATGCGCCCGATTCGCCAACAGATTTCATTGATGGGTTGTCCACTGTGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTGTCACTACTGAATGTGGAAGGTTGAAAGTTTCTCCAGGTGAAATTGCTATATTACCTCAAGGCTTTCGTTTTTCTGTGAATCTTCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGCCTTGCTTCCCCTAGGGATTTCCTTGTTCCCACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAATTTGGTGGTGAGCTCTTTGATGCAGTACAAGATTTCTCTCCTTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATATGTATGATTTAAACAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGTTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAGTTGTATGACTCCCCATGGTCCTGATACCAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGTAGGACCTTGCAAGATCACTGACACAATGGCTTTTATGTTTGAATCGAGTTTGATACCCCGTATCAGTCAATGGGCCTCAGAATCACCGTTCTTGGACCAAGATTATTACCAGTGTTGGATTGGCCTGAAATCTCATTTTGCAGTTACTAAGACGTCTCCTGAAAACCCAAGCTTGGGAAATGGAGATTGAGGAGTGAAATGGGTGTTGCGACACAGGCAGTTAGACCACCAAAAGATTGGGTTTCTTTGTACATAAAAATAAATGTAATTACAAAAATATAATTTAGGTGTGTCAAAAGTGAACTCAACCCAATTGGTGGGAATCAAATGGTTTCAGGCAAGTTTTATGTACAGTGCAAGGGACTGGAATCTTTAAGATCTGTCCTAAAGAGGGTCTGTGTTAATCACAATCTATAAGTTAGGTTGTTTTTGGTTGTGCGTTATTTTCATGCAGGATTCCTAAGAAGTAGGAGCTCATAACTTTTGATTTAACAATCATTTGAAATCTTCCAACGGAAAACAAACACGTACTTAGAGATA
Coding sequences of Glyma.12g158600
>Glyma.12g158600.1 sequence-type=CDS polypeptide=Glyma.12g158600.1.p locus=Glyma.12g158600 ID=Glyma.12g158600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAACCCAATCGACGGTGGCGAGTTCGTGTACCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGTGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGCCTCTACGCCGAGCAAATCTCTGGCACCTCCTTCACCTCCCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAGCCATCGGTGACTCACGAACCGTTCAAGCCTAGGGTACCTGGTAATGGCAGAATTTTGAGTGAGTTTAACAACTCCAACAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCTTGGATGCGCCCGATTCGCCAACAGATTTCATTGATGGGTTGTCCACTGTGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTGTCACTACTGAATGTGGAAGGTTGAAAGTTTCTCCAGGTGAAATTGCTATATTACCTCAAGGCTTTCGTTTTTCTGTGAATCTTCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGCCTTGCTTCCCCTAGGGATTTCCTTGTTCCCACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAATTTGGTGGTGAGCTCTTTGATGCAGTACAAGATTTCTCTCCTTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATATGTATGATTTAAACAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGTTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAGTTGTATGACTCCCCATGGTCCTGATACCAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGTAGGACCTTGCAAGATCACTGACACAATGGCTTTTATGTTTGAATCGAGTTTGATACCCCGTATCAGTCAATGGGCCTCAGAATCACCGTTCTTGGACCAAGATTATTACCAGTGTTGGATTGGCCTGAAATCTCATTTTGCAGTTACTAAGACGTCTCCTGAAAACCCAAGCTTGGGAAATGGAGATTGA

>Glyma.12g158600.2 sequence-type=CDS polypeptide=Glyma.12g158600.2.p locus=Glyma.12g158600 ID=Glyma.12g158600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAACCCAATCGACGGTGGCGAGTTCGTGTACCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGTGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGCCTCTACGCCGAGCAAATCTCTGGCACCTCCTTCACCTCCCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAGCCATCGGTGACTCACGAACCGTTCAAGCCTAGGGTACCTGGTAATGGCAGAATTTTGAGTGAGTTTAACAACTCCAACAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCTTGGATGCGCCCGATTCGCCAACAGATTTCATTGATGGGTTGTCCACTGTGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTGTCACTACTGAATGTGGAAGGTTGAAAGTTTCTCCAGGTGAAATTGCTATATTACCTCAAGGCTTTCGTTTTTCTGTGAATCTTCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGCCTTGCTTCCCCTAGGGATTTCCTTGTTCCCACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAATTTGGTGGTGAGCTCTTTGATGCAGTACAAGATTTCTCTCCTTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATATGTATGATTTAAACAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGTTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAGTTGTATGACTCCCCATGGTCCTGATACCAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGTAGGACCTTGCAAGATCACTGACACAATGGCTTTTATGTTTGAATCGAGTTTGATACCCCGTATCAGTCAATGGGCCTCAGAATCACCGTTCTTGGACCAAGATTATTACCAGTGTTGGATTGGCCTGAAATCTCATTTTGCAGTTACTAAGACGTCTCCTGAAAACCCAAGCTTGGGAAATGGAGATTGA
Predicted protein sequences of Glyma.12g158600
>Glyma.12g158600.1.p sequence-type=predicted peptide transcript=Glyma.12g158600.1 locus=Glyma.12g158600 ID=Glyma.12g158600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENPIDGGEFVYLSGFGNHFSSEALAGALPVAQNSPLVCPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSNSSANPTQLRWKPLDAPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQQGRLLVTTECGRLKVSPGEIAILPQGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPTAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYVPYMYDLNKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPCKITDTMAFMFESSLIPRISQWASESPFLDQDYYQCWIGLKSHFAVTKTSPENPSLGNGD*

>Glyma.12g158600.2.p sequence-type=predicted peptide transcript=Glyma.12g158600.2 locus=Glyma.12g158600 ID=Glyma.12g158600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENPIDGGEFVYLSGFGNHFSSEALAGALPVAQNSPLVCPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSNSSANPTQLRWKPLDAPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQQGRLLVTTECGRLKVSPGEIAILPQGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPTAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYVPYMYDLNKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPCKITDTMAFMFESSLIPRISQWASESPFLDQDYYQCWIGLKSHFAVTKTSPENPSLGNGD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo