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Report for Sequence Feature Glyma.12g158300

Feature Type:gene_model
Chromosome:Gm12
Start:26631231
stop:26632037
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g158300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47640.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000387GO-bp spliceosomal snRNP assembly EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0005682GO-cc U5 snRNP EnsemblGenomesN/AIEA
GO:0005685GO-cc U1 snRNP EnsemblGenomesN/AIEA
GO:0005686GO-cc U2 snRNP EnsemblGenomesN/AIEA
GO:0030532GO-cc small nuclear ribonucleoprotein complex EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
KOG3459 KOG Small nuclear ribonucleoprotein (snRNP) Sm core protein JGI N/AIEA
PTHR12777Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.12g158300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g158300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g18710 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g158300
>Glyma.12g158300.1 sequence-type=CDS polypeptide=Glyma.12g158300.1.p locus=Glyma.12g158300 ID=Glyma.12g158300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGCCAGTCAACAAGGATAGATTCATCAGCAAAATGTTTCTCCGTGGAGATTCTGTCACCATTGTTCTTAGGAACCCCAAATGA
Predicted protein sequences of Glyma.12g158300
>Glyma.12g158300.1.p sequence-type=predicted peptide transcript=Glyma.12g158300.1 locus=Glyma.12g158300 ID=Glyma.12g158300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEDNEEEEFNTEPLFVLMMSVKNNTQVLINCQNNKKLLGRVRAFDRNCNMVLENVREIWTEPVNKDRFISKMFLRGDSVTIVLRNPK*






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