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Report for Sequence Feature Glyma.12g157700

Feature Type:gene_model
Chromosome:Gm12
Start:26052868
stop:26069849
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g157700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14890.1AT phosphoesterase JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0046939GO-bp nucleotide phosphorylation EnsemblGenomesN/AIEA
GO:0098504GO-bp DNA 3' dephosphorylation involved in DNA repair EnsemblGenomesN/AIEA
GO:0098506GO-bp polynucleotide 3' dephosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003690GO-mf double-stranded DNA binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046403GO-mf polynucleotide 3'-phosphatase activity EnsemblGenomesN/AIEA
GO:0046404GO-mf ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity EnsemblGenomesN/AIEA
PTHR12083Panther POLYNUCLEOTIDE KINASE- 3'-PHOSPHATASE JGI N/AIEA
PF00645PFAM Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region JGI N/AIEA
PF08645PFAM Polynucleotide kinase 3 phosphatase JGI N/AIEA
GN7V-60658SoyCyc9-rxn 3'(2'),5'-bisphosphate nucleotidase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g157700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g157700 not represented in the dataset
Glyma.12g157700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g157700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g18403 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g157700
>Glyma.12g157700.2 sequence-type=transcript locus=Glyma.12g157700 ID=Glyma.12g157700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCCTATGCTGTTCCTGAATTCGCCCAAATTCTCTCTCTGCCTCTTTACTCACTCACTCACACTCCGCTCCGCTTAACTGTAATGGAACCATTCCATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAgatggcggctcgcgaatcgatgatggcggattacgcgaaatcggggaAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGGTTAATGAAGCAGTGGAAGATGTACGAAATGAGCTGCAAGAGACTGGAGAGCGTGGTTCAAAGAGATTAAGGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGAGCATCTAATTAAGTCATTGGTTCATAGGAAGGTTAAGGTCTTATAGGTGTCCAGTTTTGTTTGAAAGTGACATTACCAACTGGAAGTATGGAACAGAAAGGATGTAAATGAATTTCTGGGCAATCCTAAACCCTAAACTTAACGCATAGTCGACTAATTTGTGAGCAATCCCAAATTTATTTTATGGTGCTTCAACTTGATTCTTATCGACCAGCTTTATTTCATTTTAAAATAGATATAATTTCTAAAGAACCAGGACCGTGGTTGTTTCGGATCCAAAATTTAAATTGGA
Coding sequences of Glyma.12g157700
>Glyma.12g157700.1 sequence-type=CDS polypeptide=Glyma.12g157700.1.p locus=Glyma.12g157700 ID=Glyma.12g157700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGGTTAATGAAGCAGTGGAAGATGTACGAAATGAGCTGCAAGAGACTGGAGAGCGTGGTTCAAAGAGATTAAGGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGA

>Glyma.12g157700.2 sequence-type=CDS polypeptide=Glyma.12g157700.2.p locus=Glyma.12g157700 ID=Glyma.12g157700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGGTTAATGAAGCAGTGGAAGATGTACGAAATGAGCTGCAAGAGACTGGAGAGCGTGGTTCAAAGAGATTAAGGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGA
Predicted protein sequences of Glyma.12g157700
>Glyma.12g157700.1.p sequence-type=predicted peptide transcript=Glyma.12g157700.1 locus=Glyma.12g157700 ID=Glyma.12g157700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRIPNFIAVNVRHRLRNFPNPIPFLLSVSVAASLPPLRNRSPSQMAARESMMADYAKSGKSSCRACSQKIEAKALRLASVSKGNGPYDIVKWHHLRCFPLSSHSHSSPESIRGFSSLKSSDQEALKKLFAENNKSEEKVNEAVEDVRNELQETGERGSKRLRSSDQEALKKLFAENNKSEEKLCTPDVKAVVNIKFSVSDVKSNYKDATLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLVKTDVKRVGADAWSLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIVKVKVPVQVFIACGVGSKSGKVNKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDKSFFVGDAAGRESDHSVADIKFAEAIGLKFYVPEEYFA*

>Glyma.12g157700.2.p sequence-type=predicted peptide transcript=Glyma.12g157700.2 locus=Glyma.12g157700 ID=Glyma.12g157700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRIPNFIAVNVRHRLRNFPNPIPFLLSVSVAASLPPLRNRSPSQMAARESMMADYAKSGKSSCRACSQKIEAKALRLASVSKGNGPYDIVKWHHLRCFPLSSHSHSSPESIRGFSSLKSSDQEALKKLFAENNKSEEKVNEAVEDVRNELQETGERGSKRLRSSDQEALKKLFAENNKSEEKLCTPDVKAVVNIKFSVSDVKSNYKDATLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLVKTDVKRVGADAWSLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIVKVKVPVQVFIACGVGSKSGKVNKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDKSFFVGDAAGRESDHSVADIKFAEAIGLKFYVPEEYFA*






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