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Report for Sequence Feature Glyma.12g154800

Feature Type:gene_model
Chromosome:Gm12
Start:24245316
stop:24245974
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g154800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38920.1AT SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
PTHR23041Panther RING FINGER DOMAIN-CONTAINING JGI N/AIEA
PTHR23041:SF6Panther JGI N/AIEA

Expression Patterns of Glyma.12g154800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g154800 not represented in the dataset
Glyma.12g154800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g154800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g24941 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g154800
>Glyma.12g154800.1 sequence-type=CDS polypeptide=Glyma.12g154800.1.p locus=Glyma.12g154800 ID=Glyma.12g154800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTATTGCAATGAGGGAAATACTTCAGAAATATGATAAAGTACACAGCTCTTTGAATGGAAAGAATTTCAAGTCTAGGATGAATGCCGAACACATTGACCTTTTGCACTCACCTTGGCTAATTGAATTGGGAGCTTTTTATCTGAATTCTAGCGGACTAGATAATTGTGAGCTTGATGGAGTCTACGGTTTCTTTTCATGTGATCTAAGCATAACTAAAGCTGTAATGACGTTGGTTCTTCCCGATTCTATTAATCTCGAGTATGATTTAACTTGTGCAATTTGTCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCCTATCTTCTGCAAGTCGTGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAATCTGCAAGTCCCGAGTCAAAGTGTCCTATATGCAAAGAGGTATTTTTTTGTACTCAACATTGA
Predicted protein sequences of Glyma.12g154800
>Glyma.12g154800.1.p sequence-type=predicted peptide transcript=Glyma.12g154800.1 locus=Glyma.12g154800 ID=Glyma.12g154800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNAIAMREILQKYDKVHSSLNGKNFKSRMNAEHIDLLHSPWLIELGAFYLNSSGLDNCELDGVYGFFSCDLSITKAVMTLVLPDSINLEYDLTCAICLDFVFNPYALSCGPIFCKSCACSAASVMIFQGLKSASPESKCPICKEVFFCTQH*






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