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Report for Sequence Feature Glyma.12g147300

Feature Type:gene_model
Chromosome:Gm12
Start:20536269
stop:20541391
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g147300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54290.2AT cytochrome c biogenesis protein family JGI N/AIEA
GO:0017004GO-bp cytochrome complex assembly EnsemblGenomesN/AIEA
GO:0017004GO-bp cytochrome complex assembly JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
PF02683PFAM Cytochrome C biogenesis protein transmembrane region JGI N/AIEA

Proteins Associated with Glyma.12g147300
LocusGene SymbolProtein Name
CCDA cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like

Expression Patterns of Glyma.12g147300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g147300
ParalogEvidenceComments
Glyma.06g254100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g147300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g22350 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g147300
>Glyma.12g147300.2 sequence-type=transcript locus=Glyma.12g147300 ID=Glyma.12g147300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAAGAGAACATAGATAACCGCCACAACTCAACAACTTCTCGGGGTTTGGATTTTTTCATTCCGCATAGGTTCCGTGTTCCAAACAGTAAGGAACTACTCTCTTCTCTTCTATGCTCTGTAACTCTCTAGACGATGAGTTTGAGTATGAGCTTGTGTGGTAGTTACAGTCTTCAAATTCGAAATCGCAGAATTGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAAACTTCCAAACCTGAAAATTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCACTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCAATGACTGGTTTGGAGGCTTTCTATATTCAGCTGGACAACAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGGCTTGTGACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCAGAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTTGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAGTTACGGCTGCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCCGCTGCCAATTTCCCATCCAGTGTGCAAGCCTACCTGGCTGGGCTTACATTTGCTTTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACTCTTTTGGGATATGTTGCTGCATCCAAGGATCCTGTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCATTACAGGTCAGTACATGACATTTTTGGTTTCATAAAATAACTTTCTAATTCTAAAATTCAGATGTCTCGTGGAGAACAATATTTCTGATTTGAATCTGTATTGATAGAGCTTGCTCTCATTTCGCAAGTTCTCAGCATGGATCAATCCTATAAGGTAATTTTTGAACTTTTAATAAAGAGTGCACACTCATGTTCCCCCTACACAATTTATGGTATGATTATTTTCTAGTTTTTAGAGACTAGAGTATCCACTTGTTGAATTTCATAGTTTCCATGGTTTCTTATGCATGTTACAATTTTCTTGTCCCACAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACTTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAGAAAATCTCTTGGCTCTAACACGCTGTGATCTTTTTTACTTTTTACCGTTCAATGTATATATGTCACACAAGTACTCAATTGAAATAGAAATCCAAATGAGACTTTGCATACCACGGCCGAATTTTCTTCATCCAATTACATAATATATTTGTTGGTTTAATTTTCTTCCTAGCCGAATTTGGCGTGCAGAATATTATATTGGTAGGGAACTTACTGCATTGGATCATTTATTAACTTCAACGGAGCAAAATTTTGATAATGATAATCACAATGACCAAAGCATCCTCTCCTTTAAGGGATGTGAATTGCAGTCTTCATGGTTTCAATCTCACATTGGGTCAGTCTCTTTAAACATAAGCTGTGGTGGTACATTCATTACTGGTACGAAAGATTAA
Coding sequences of Glyma.12g147300
>Glyma.12g147300.1 sequence-type=CDS polypeptide=Glyma.12g147300.1.p locus=Glyma.12g147300 ID=Glyma.12g147300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTTGAGTATGAGCTTGTGTGGTAGTTACAGTCTTCAAATTCGAAATCGCAGAATTGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAAACTTCCAAACCTGAAAATTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCACTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCAATGACTGGTTTGGAGGCTTTCTATATTCAGCTGGACAACAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGGCTTGTGACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCAGAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTTGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAGTTACGGCTGCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCCGCTGCCAATTTCCCATCCAGTGTGCAAGCCTACCTGGCTGGGCTTACATTTGCTTTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACTCTTTTGGGATATGTTGCTGCATCCAAGGATCCTGTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCATTACAGAGCTTGCTCTCATTTCGCAAGTTCTCAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACTTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAG

>Glyma.12g147300.2 sequence-type=CDS polypeptide=Glyma.12g147300.2.p locus=Glyma.12g147300 ID=Glyma.12g147300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTTGAGTATGAGCTTGTGTGGTAGTTACAGTCTTCAAATTCGAAATCGCAGAATTGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAAACTTCCAAACCTGAAAATTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCACTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCAATGACTGGTTTGGAGGCTTTCTATATTCAGCTGGACAACAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGGCTTGTGACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCAGAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTTGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAGTTACGGCTGCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCCGCTGCCAATTTCCCATCCAGTGTGCAAGCCTACCTGGCTGGGCTTACATTTGCTTTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACTCTTTTGGGATATGTTGCTGCATCCAAGGATCCTGTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCATTACAGGTCAGTACATGA
Predicted protein sequences of Glyma.12g147300
>Glyma.12g147300.1.p sequence-type=predicted peptide transcript=Glyma.12g147300.1 locus=Glyma.12g147300 ID=Glyma.12g147300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLSMSLCGSYSLQIRNRRIVSCNLHQDGRHIVPINTHQKTSKPENCLRSKWKINGNNIRTCIGVMTVAHLVAPVTAKAEVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM*

>Glyma.12g147300.2.p sequence-type=predicted peptide transcript=Glyma.12g147300.2 locus=Glyma.12g147300 ID=Glyma.12g147300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLSMSLCGSYSLQIRNRRIVSCNLHQDGRHIVPINTHQKTSKPENCLRSKWKINGNNIRTCIGVMTVAHLVAPVTAKAEVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQVST*






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