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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54770.1 | AT | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) | JGI | N/A | IEA |
| GO:0006950 | GO-bp | response to stress | EnsemblGenomes | N/A | IEA |
| GO:0009228 | GO-bp | thiamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0052837 | GO-bp | thiazole biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG2960 | KOG | Protein involved in thiamine biosynthesis and DNA damage tolerance | JGI | N/A | IEA |
| PTHR10617 | Panther | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE | JGI | N/A | IEA |
| PTHR10617:SF54 | Panther | JGI | N/A | IEA | |
| PF01946 | PFAM | Thi4 family | JGI | N/A | IEA |
| PWY-6909 | SoyCyc9 | thiazole biosynthesis III (eukaryotes) | Plant Metabolic Network | ISS | |
| THISYNARA-PWY | SoyCyc9 | superpathway of thiamine diphosphate biosynthesis III (eukaryotes) | Plant Metabolic Network | ISS | |
| GN7V-65137 | SoyCyc9-rxn | thiazole synthase (eucaryotic) | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SC-03 | thiamin biosynthetic enzyme |
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Glyma.12g135000 not represented in the dataset |
Glyma.12g135000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g269700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g16380 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g135000.1 sequence-type=CDS polypeptide=Glyma.12g135000.1.p locus=Glyma.12g135000 ID=Glyma.12g135000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTTCCACCATCACCTCCTCCTTCCTCACATCACACCCTTCATCCCTCTTCAACAAATCATCATCTTCATCATTCCCCTCCTTCCATGCCACCCCCACTCTCCGCCCCCACAGGCCACGCGCCTCCATGTCCGCGGCAGCGCCACCGCCGCCCTACGACTTCGGCTCGTTCCGGTTCGAGCCGATTAGGGAGTCGATCGTGTCGCGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGACGTCGTCGTCGTCGGCGCAGGCTCCGCGGGTCTCTCGTGCGCCTACGAGCTCTCCAAAAACCCCTCCGTCAATATCGCCATAGTCGAGCAGTCCGTCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCCAGGCCAAACGTGAAGCTCTTCAACGCCGTGGCGGCCGAGGACTTGATTGTGAAGAACGGGAGAGTTGGTGGGGTGGTGACAAACTGGGCCTTGGTTTCAATGAACCATGACACTCAATCCTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTGGTGAGTTCTTGTGGCCATGATGGACCCTTTGGCGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGTTGATTGATAGTGTGCCAGGGATGAAAGCCCTTGACATGAACAAGGCAGAGGATGCCATTGTGAAGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGGGTCCAACATTTGGAGCAATGATGATTTCAGGGCAGAAAGCAGCCCATCTGGCTTTGAGATCATTGGGACTTCCCAATGCTTTGGATTCTGTAGGAAACGTTCATCCTGAGCTTGTCCTAGCTGCTGCTGAATCTGCTGAAATTGCAGACGCTTAA
>Glyma.12g135000.1.p sequence-type=predicted peptide transcript=Glyma.12g135000.1 locus=Glyma.12g135000 ID=Glyma.12g135000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSTITSSFLTSHPSSLFNKSSSSSFPSFHATPTLRPHRPRASMSAAAPPPPYDFGSFRFEPIRESIVSREMTRRYMTDMVTHADTDVVVVGAGSAGLSCAYELSKNPSVNIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDSVPGMKALDMNKAEDAIVKLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRSLGLPNALDSVGNVHPELVLAAAESAEIADA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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