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Report for Sequence Feature Glyma.12g132800

Feature Type:gene_model
Chromosome:Gm12
Start:15037716
stop:15042478
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g132800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23410.1AT fatty alcohol oxidase 3 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016614GO-mf oxidoreductase activity, acting on CH-OH group of donors EnsemblGenomesN/AIEA
GO:0016614GO-mf oxidoreductase activity, acting on CH-OH group of donors JGI N/AIEA
GO:0046577GO-mf long-chain-alcohol oxidase activity EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
KOG1238 KOG Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) JGI N/AIEA
PTHR10668Panther PHYTOENE DEHYDROGENASE JGI N/AIEA
PTHR10668:SF14Panther JGI N/AIEA
PF00732PFAM GMC oxidoreductase JGI N/AIEA
PF05199PFAM GMC oxidoreductase JGI N/AIEA
GN7V-41084SoyCyc9-rxn long-chain-alcohol oxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g132800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g132800 not represented in the dataset
Glyma.12g132800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g132800
ParalogEvidenceComments
Glyma.06g272200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g132800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g15940 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g132800
>Glyma.12g132800.1 sequence-type=CDS polypeptide=Glyma.12g132800.1.p locus=Glyma.12g132800 ID=Glyma.12g132800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAGAAAAGAGTGTCATCCATTGTTAAGGGGTGGGAGAGGGGATAGCAAATATAAACATGGATTTTCTGCAGCTGAGATGGAGTCACTGGCAAGCATATGTGAGGTTGTGTTGCCTCCTTTGCCTATGGATGCTCTTAAGATCAGAAAGGAAGACCAAATTGATGATTATGATTCTAGCAAGAGTCTCAAGTCCTTCTGGGACATTTCTGCTTCTCGCTATCCAATCCCTCATGAGGTTGCTGAGATGTTAACGAAGAGGAGCTTAATTGAAGCAGTAATACTGATTAGAGTAGTTTTATGGCTGCTGGCAACAAGGTTGGGAACCTTGTTGCTCTGTGGTTTCCTCTGTCTTGGTGAAAAATGGCCCTATGTCAACAACTTCTCAAACATATCTTTGGAGAAAAGAGAAATGGTTATGCAGAAGTGGCTGAAACATAGGTTCCTCACACCTATTAGACTGGCCTTTGCTTACATCAAAGTCTTGTGTCTCTTTGTTTTTTTCTCTTGGGTTGATGAAAATGGTGACAACCCAGCATGGAAAGCCATTGGATATGAGGTACCAGCTGATGAAAACTTGACCAATGCCTCCAAAACTAGGCCCCTTGAAAAGGGGATTATAGAAACCATGAATGAATCTGACTCCGCTCTTCAACAATCTCTTGCTAACAAAGGCCTTAATGTTACACTGGACTCAAAAAGCAACATCCTCAAAGTCAAATGTGATGCACTAGTTGTTGGTTCTGGTTGTGGAGGAGGTGTTGCGGCTGCTGTTCTTTCAAGTGCTGGCTACAAGGTGGTTGTTCTTGAGAAAGGAAACTATTTTTCTACTCAGGATTATTCATCTCTAGAAGGTCCTTCCATGAATCAACTATATGAAACTGGAGGGATCCTTGCTTCTGTGGACTCAAGAGTGCTAGTTTTGGCAGGATCAACAGTGGGTGGTGGCTCTGCTGTTAATTGGTCAGCCTGCATTAAGACCCCACACAAGGTGCTAAATGAGTGGTCTGAGAATCACAAGCTTCCCTTCTTTTCAAGCCAAGAATATCTCTCCGCAATGGAAACTGTGTGTGAAAGGATTGGTGTAACAGAAAACTGTACACAAGAGGGATTCCAAAACCAAGTGCTGAGAAAAGGGTGTCAAAATCTTGGCCTCAAAGTTGACTATGTGCCAAGAAACTCCTCAGGGAATCACTACTGTGGCTCATGTGGTTATGGCTGTCCGAAAGGAGAGAAACAAGGGACTCAAGCTACATGGCTTGTAGATGCAGTTGAAAGAGATGCAGTAATAATAACAGGATGCAAAGCTGAGAGGTTCTTGTTGGAAAGCAACAGGAGTGGAAATGGCAGAAAGAAGAAATGTTTGGGAGTGATGGCAAAAGCATTAAACAGCAGAGTCACAATGAAGTTACAAATTGAGGCCAAGGTGACAATTTCTGCAGGTGGGGCACTTTTGACACCCCCTTTGTTAATCTCTAGTGGACTAAAAAACAAGAACATAGGTAAAAACCTTCATCTCCACCCTGTGCTAATGACATGGGGATACTTTCCAGAATCAAATGATTCAGAATTCAAAGGAAAAGTCTACGAGGGAGGTATAATAACATCAGTCCACAAAGTGCCATCAACAGACTCCAATTCAGATTCAAGGGCAATAATTGAAACCCCTTCGCTAGGACCAGCTTCCTTTGCAGCACTGTGTCCTTGGGAGTCAGGACTAGACTTTAAGGAAAGAATGCTGAATTACCCTAGAACTTCACATTTGATAACAATAATAAGAGACATGGCTTGTGGACAGGTATCAACAGAAGGAAGGATCAGCTACAAGCTGAATGAAATTGACAAGGAGAACATGAAGGCTGGCTTGAAACAAGCACTGAAGATTCTTATAGCTGCAGGAGCAGTTGAGGTAGGTACACACAGAAGTGATGGTCAGAGACTTAAGTGTGATGGCATTGGTGAAAATGAAGTGCAAGAGTTCTTGGACAGTGTGTGTCCAATGGAGGGGGCACTTTCACCAGGTGAGTATTGGAACATATATTCTTCTGCACATCAAATGGGGAGCTGCAGAATGGGAGTCAATGAGAAAGAAGGTGCAGTTGATGAAAATGGTGAGACATGGGAGGCTGAAGGGTTGTTTGTTTGTGATGCTAGTGTGCTTCCAAGTGCTGTTGGTGTCAATCCCATGATCACGGTCCAATCAACTGCATACTGCATCTCTAATAGAATAGCAGATTATCTTAGAAGGGATTAA
Predicted protein sequences of Glyma.12g132800
>Glyma.12g132800.1.p sequence-type=predicted peptide transcript=Glyma.12g132800.1 locus=Glyma.12g132800 ID=Glyma.12g132800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTRKECHPLLRGGRGDSKYKHGFSAAEMESLASICEVVLPPLPMDALKIRKEDQIDDYDSSKSLKSFWDISASRYPIPHEVAEMLTKRSLIEAVILIRVVLWLLATRLGTLLLCGFLCLGEKWPYVNNFSNISLEKREMVMQKWLKHRFLTPIRLAFAYIKVLCLFVFFSWVDENGDNPAWKAIGYEVPADENLTNASKTRPLEKGIIETMNESDSALQQSLANKGLNVTLDSKSNILKVKCDALVVGSGCGGGVAAAVLSSAGYKVVVLEKGNYFSTQDYSSLEGPSMNQLYETGGILASVDSRVLVLAGSTVGGGSAVNWSACIKTPHKVLNEWSENHKLPFFSSQEYLSAMETVCERIGVTENCTQEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHYCGSCGYGCPKGEKQGTQATWLVDAVERDAVIITGCKAERFLLESNRSGNGRKKKCLGVMAKALNSRVTMKLQIEAKVTISAGGALLTPPLLISSGLKNKNIGKNLHLHPVLMTWGYFPESNDSEFKGKVYEGGIITSVHKVPSTDSNSDSRAIIETPSLGPASFAALCPWESGLDFKERMLNYPRTSHLITIIRDMACGQVSTEGRISYKLNEIDKENMKAGLKQALKILIAAGAVEVGTHRSDGQRLKCDGIGENEVQEFLDSVCPMEGALSPGEYWNIYSSAHQMGSCRMGVNEKEGAVDENGETWEAEGLFVCDASVLPSAVGVNPMITVQSTAYCISNRIADYLRRD*






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