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Report for Sequence Feature Glyma.12g122900

Feature Type:gene_model
Chromosome:Gm12
Start:13454368
stop:13458474
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g122900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58610.1AT ketol-acid reductoisomerase JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process JGI N/AIEA
GO:0009082GO-bp branched-chain amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009082GO-bp branched-chain amino acid biosynthetic process JGI N/AIEA
GO:0009097GO-bp isoleucine biosynthetic process EnsemblGenomesN/AIEA
GO:0009099GO-bp valine biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004455GO-mf ketol-acid reductoisomerase activity EnsemblGenomesN/AIEA
GO:0004455GO-mf ketol-acid reductoisomerase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR21371Panther FAMILY NOT NAMED JGI N/AIEA
PTHR21371:SF4Panther JGI N/AIEA
PF01450PFAM Acetohydroxy acid isomeroreductase, catalytic domain JGI N/AIEA
PF07991PFAM Acetohydroxy acid isomeroreductase, catalytic domain JGI N/AIEA
BRANCHED-CHAIN-AA-SYN-PWYSoyCyc9 superpathway of branched chain amino acid biosynthesis Plant Metabolic Network ISS
VALSYN-PWYSoyCyc9 L-valine biosynthesis Plant Metabolic Network ISS
GN7V-61805SoyCyc9-rxn ketol-acid reductoisomerase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g122900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g122900
ParalogEvidenceComments
Glyma.06g283200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g122900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g14420 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g122900
>Glyma.12g122900.2 sequence-type=transcript locus=Glyma.12g122900 ID=Glyma.12g122900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGTTAGCCGAGTTGCACGAATCCCTACATATAAAACACACCGTTTCGCTGTACTGATTTTTTTTGCCACTCTGCTGCAGTGCTGCTTCATACTTTTTCTCGCCTATAAAATGTCCGCCACTGCTTCACTCTGCGCCACTTCCAGAACAACTTTCTCATCATCGAAGCCCGTCGCGAGAAGAAGCTGCTTCGTCGCGGTTCCCAAAATCGCGTTTCCCAAGCTCCGTTTCAAACCCGTCGCTATGGCTACGCTCGGCGCTCGCATGGTGGCCGCCGCACCCACCGTCACTCCGCCGGCCTCGCTCGACTTCGAAACCTCCGTTTTCAAGAAGGAGAAGATTAACCTCGCTGGACACGACGAGTACATCGTGAAAGGAGGGAGGGATTTGTTCCCTCTGTTGCAGGGTGCTTTCAAGGGGATTAAGCAGATTGGCGTCATTGGATGGGGTTCGCAGGGACCTGCTCAGGCACAGAATTTGCGGGACTCGCTTGCTGATGCAAAGTCTGATATTGTGGTCAAGGTTGGGCTCAGGAAAGGTTCTCGCTCCTTTAATGAGGCTCGCGCAGCTGGTTTTAGTGAGGAGAATGGAACTTTGGGTGACATATGGGAAACTATCTCAGGCAGTGATCTTGTGTTGCTCTTGATTTCTGATGCTGCACAGGCTGATAATTATGAAAAAATATTTTCCCACATGAAACCAAATAGCATACTGGGTCTGTCCCATGGTTTTCTTCTTGGGCATTTACAGTCAATAGGACTTGATTTTCCCAAGCACTTCAGTGTAATTGCTGTCTGCCCGAAAGGTATGGGTCCTTCTGTCAGGAGGCTGTATGTCCAAGGCAAAGAGATAAATGGTGCTGGAATTAATTCGAGTTTTGCAGTCCACCAGGATGTGGATGGCAGAGCTACTGATGTTGCTTTGGCATGGTCTGTTGCCCTTGGTTCGCCTTTTACATTTGCAACTTCGTTAGAGATGGAATACAGGAGTGACATCTTTGGGGAGAGAGGCATTTTACTTGGTGCTGTTCATGGTATTGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAGTGAAGATTTGGCCTATAACAACACTGTCGAGTCCATTACAGGAACTATATCTAAAATAATCTCGACTAAGGGTATGTTGGCTGTATACAATGCTTTATCTGAAGATGAAAAGAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCATGCATGGACATTTTGTATGAGTGCTATGAGGATATTGCTGCTGGAAGTGAGATTCGCAGTGTTGTCTTGGCTGGGCGGCGCTTTTATGAGAAAGAGGGTCTGCCTGCATTTCCCATGGGTAAAATTGATCAGACCCGGATGTGGAAGGTTGGTGAGCGTGTCCGTTCTACAAGGCCAGCTGGTGATCTAGGTCCATTATACCCATTTACTGCTGGGGTCTACGTGGCATTGATGATGGCCCAGGTATGTGCACTTAATTCTGTTAGAGATTTTTCTTGCTAGTTTATATATGTATATCCCTTGTGGCAGGCAGTCCTTATTTTATTGATA
Coding sequences of Glyma.12g122900
>Glyma.12g122900.1 sequence-type=CDS polypeptide=Glyma.12g122900.1.p locus=Glyma.12g122900 ID=Glyma.12g122900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGCCACTGCTTCACTCTGCGCCACTTCCAGAACAACTTTCTCATCATCGAAGCCCGTCGCGAGAAGAAGCTGCTTCGTCGCGGTTCCCAAAATCGCGTTTCCCAAGCTCCGTTTCAAACCCGTCGCTATGGCTACGCTCGGCGCTCGCATGGTGGCCGCCGCACCCACCGTCACTCCGCCGGCCTCGCTCGACTTCGAAACCTCCGTTTTCAAGAAGGAGAAGATTAACCTCGCTGGACACGACGAGTACATCGTGAAAGGAGGGAGGGATTTGTTCCCTCTGTTGCAGGGTGCTTTCAAGGGGATTAAGCAGATTGGCGTCATTGGATGGGGTTCGCAGGGACCTGCTCAGGCACAGAATTTGCGGGACTCGCTTGCTGATGCAAAGTCTGATATTGTGGTCAAGGTTGGGCTCAGGAAAGGTTCTCGCTCCTTTAATGAGGCTCGCGCAGCTGGTTTTAGTGAGGAGAATGGAACTTTGGGTGACATATGGGAAACTATCTCAGGCAGTGATCTTGTGTTGCTCTTGATTTCTGATGCTGCACAGGCTGATAATTATGAAAAAATATTTTCCCACATGAAACCAAATAGCATACTGGGTCTGTCCCATGGTTTTCTTCTTGGGCATTTACAGTCAATAGGACTTGATTTTCCCAAGCACTTCAGTGTAATTGCTGTCTGCCCGAAAGGTATGGGTCCTTCTGTCAGGAGGCTGTATGTCCAAGGCAAAGAGATAAATGGTGCTGGAATTAATTCGAGTTTTGCAGTCCACCAGGATGTGGATGGCAGAGCTACTGATGTTGCTTTGGCATGGTCTGTTGCCCTTGGTTCGCCTTTTACATTTGCAACTTCGTTAGAGATGGAATACAGGAGTGACATCTTTGGGGAGAGAGGCATTTTACTTGGTGCTGTTCATGGTATTGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAGTGAAGATTTGGCCTATAACAACACTGTCGAGTCCATTACAGGAACTATATCTAAAATAATCTCGACTAAGGGTATGTTGGCTGTATACAATGCTTTATCTGAAGATGAAAAGAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCATGCATGGACATTTTGTATGAGTGCTATGAGGATATTGCTGCTGGAAGTGAGATTCGCAGTGTTGTCTTGGCTGGGCGGCGCTTTTATGAGAAAGAGGGTCTGCCTGCATTTCCCATGGGTAAAATTGATCAGACCCGGATGTGGAAGGTTGGTGAGCGTGTCCGTTCTACAAGGCCAGCTGGTGATCTAGGTCCATTATACCCATTTACTGCTGGGGTCTACGTGGCATTGATGATGGCCCAGATTGAGATCCTGAGGAAGAAGGGGCATTCTTACTCTGAAATTATTAACGAGAGTGTCATTGAGTCTGTTGATTCTTTGAATCCTTTCATGCATGCTCGTGGTGTTTCATTCATGGTTGATAACTGTTCAACTACGGCAAGGTTGGGTTCAAGGAAATGGGCTCCCCGATTTGATTACATCCTAACCCAGCAGGCCTTGGTGGCTGTGGACAATGGAGCACCTATCAACCAGGACCTAATCAGTAACTTCCTGTCAGACCAAGTGCATGGAGCCATTGAAGTTTGTGCTCAACTGAGACCTACAGTAGACATTTCTGTGCCACCAGATGCAGACTTTGTCCGTCCCGAGTTGCGTCAGTCTAGCAATTAG

>Glyma.12g122900.2 sequence-type=CDS polypeptide=Glyma.12g122900.2.p locus=Glyma.12g122900 ID=Glyma.12g122900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGCCACTGCTTCACTCTGCGCCACTTCCAGAACAACTTTCTCATCATCGAAGCCCGTCGCGAGAAGAAGCTGCTTCGTCGCGGTTCCCAAAATCGCGTTTCCCAAGCTCCGTTTCAAACCCGTCGCTATGGCTACGCTCGGCGCTCGCATGGTGGCCGCCGCACCCACCGTCACTCCGCCGGCCTCGCTCGACTTCGAAACCTCCGTTTTCAAGAAGGAGAAGATTAACCTCGCTGGACACGACGAGTACATCGTGAAAGGAGGGAGGGATTTGTTCCCTCTGTTGCAGGGTGCTTTCAAGGGGATTAAGCAGATTGGCGTCATTGGATGGGGTTCGCAGGGACCTGCTCAGGCACAGAATTTGCGGGACTCGCTTGCTGATGCAAAGTCTGATATTGTGGTCAAGGTTGGGCTCAGGAAAGGTTCTCGCTCCTTTAATGAGGCTCGCGCAGCTGGTTTTAGTGAGGAGAATGGAACTTTGGGTGACATATGGGAAACTATCTCAGGCAGTGATCTTGTGTTGCTCTTGATTTCTGATGCTGCACAGGCTGATAATTATGAAAAAATATTTTCCCACATGAAACCAAATAGCATACTGGGTCTGTCCCATGGTTTTCTTCTTGGGCATTTACAGTCAATAGGACTTGATTTTCCCAAGCACTTCAGTGTAATTGCTGTCTGCCCGAAAGGTATGGGTCCTTCTGTCAGGAGGCTGTATGTCCAAGGCAAAGAGATAAATGGTGCTGGAATTAATTCGAGTTTTGCAGTCCACCAGGATGTGGATGGCAGAGCTACTGATGTTGCTTTGGCATGGTCTGTTGCCCTTGGTTCGCCTTTTACATTTGCAACTTCGTTAGAGATGGAATACAGGAGTGACATCTTTGGGGAGAGAGGCATTTTACTTGGTGCTGTTCATGGTATTGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAGTGAAGATTTGGCCTATAACAACACTGTCGAGTCCATTACAGGAACTATATCTAAAATAATCTCGACTAAGGGTATGTTGGCTGTATACAATGCTTTATCTGAAGATGAAAAGAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCATGCATGGACATTTTGTATGAGTGCTATGAGGATATTGCTGCTGGAAGTGAGATTCGCAGTGTTGTCTTGGCTGGGCGGCGCTTTTATGAGAAAGAGGGTCTGCCTGCATTTCCCATGGGTAAAATTGATCAGACCCGGATGTGGAAGGTTGGTGAGCGTGTCCGTTCTACAAGGCCAGCTGGTGATCTAGGTCCATTATACCCATTTACTGCTGGGGTCTACGTGGCATTGATGATGGCCCAGGTATGTGCACTTAATTCTGTTAGAGATTTTTCTTGCTAG
Predicted protein sequences of Glyma.12g122900
>Glyma.12g122900.1.p sequence-type=predicted peptide transcript=Glyma.12g122900.1 locus=Glyma.12g122900 ID=Glyma.12g122900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSATASLCATSRTTFSSSKPVARRSCFVAVPKIAFPKLRFKPVAMATLGARMVAAAPTVTPPASLDFETSVFKKEKINLAGHDEYIVKGGRDLFPLLQGAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKVGLRKGSRSFNEARAAGFSEENGTLGDIWETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSIGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALAWSVALGSPFTFATSLEMEYRSDIFGERGILLGAVHGIVESLFRRYTEHGMSEDLAYNNTVESITGTISKIISTKGMLAVYNALSEDEKREFEKAYSASYYPCMDILYECYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDISVPPDADFVRPELRQSSN*

>Glyma.12g122900.2.p sequence-type=predicted peptide transcript=Glyma.12g122900.2 locus=Glyma.12g122900 ID=Glyma.12g122900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSATASLCATSRTTFSSSKPVARRSCFVAVPKIAFPKLRFKPVAMATLGARMVAAAPTVTPPASLDFETSVFKKEKINLAGHDEYIVKGGRDLFPLLQGAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKVGLRKGSRSFNEARAAGFSEENGTLGDIWETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSIGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALAWSVALGSPFTFATSLEMEYRSDIFGERGILLGAVHGIVESLFRRYTEHGMSEDLAYNNTVESITGTISKIISTKGMLAVYNALSEDEKREFEKAYSASYYPCMDILYECYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVYVALMMAQVCALNSVRDFSC*






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