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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06290.1 | AT | acyl-CoA oxidase 3 | JGI | N/A | IEA |
| GO:0006631 | GO-bp | fatty acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006635 | GO-bp | fatty acid beta-oxidation | EnsemblGenomes | N/A | IEA |
| GO:0006635 | GO-bp | fatty acid beta-oxidation | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0033539 | GO-bp | fatty acid beta-oxidation using acyl-CoA dehydrogenase | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005777 | GO-cc | peroxisome | EnsemblGenomes | N/A | IEA |
| GO:0005777 | GO-cc | peroxisome | JGI | N/A | IEA |
| GO:0003995 | GO-mf | acyl-CoA dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0003995 | GO-mf | acyl-CoA dehydrogenase activity | JGI | N/A | IEA |
| GO:0003997 | GO-mf | acyl-CoA oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0003997 | GO-mf | acyl-CoA oxidase activity | JGI | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | JGI | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0071949 | GO-mf | FAD binding | EnsemblGenomes | N/A | IEA |
| KOG0135 | KOG | Pristanoyl-CoA/acyl-CoA oxidase | JGI | N/A | IEA |
| PTHR10909 | Panther | ELECTRON TRANSPORT OXIDOREDUCTASE | JGI | N/A | IEA |
| PTHR10909:SF94 | Panther | JGI | N/A | IEA | |
| PF00441 | PFAM | Acyl-CoA dehydrogenase, C-terminal domain | JGI | N/A | IEA |
| PF01756 | PFAM | Acyl-CoA oxidase | JGI | N/A | IEA |
| PF02770 | PFAM | Acyl-CoA dehydrogenase, middle domain | JGI | N/A | IEA |
| PWY-5136 | SoyCyc9 | fatty acid β-oxidation II (peroxisome) | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| PWY-6837 | SoyCyc9 | fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) | Plant Metabolic Network | ISS | |
| GN7V-48006 | SoyCyc9-rxn | acyl-CoA oxidase | Plant Metabolic Network | ISS |
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Glyma.12g120300 not represented in the dataset |
Glyma.12g120300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g285400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g14060 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g120300.1 sequence-type=CDS polypeptide=Glyma.12g120300.1.p locus=Glyma.12g120300 ID=Glyma.12g120300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACGGACAACGACCGCGTCTCCCGCCGCACCGAGGTCCTCACCAACCACCTCCTCCGCCGCACACCCCCACCCTCCCTTCTCCGCCCCCTCCCCTGCCTGAGCTACTCCCCCCCGGAGCTCTCCAACACCATCTCCTTCGACACTCGCGAGATGCGAAAACTGATGGACTGCCACAACCTTGAGGACCGCGACTGGCTCTTCTCCCTTATCCTCCAGAGCCCCCTCTTCAATCCCCGCCACCGCGCCGGAAGATTCTTCGTCTGCCCCGACTACAACCAGCCCATGGAGCACCAGCGCCAGGCCACCATGAAGCGCATCGCCTATCTCCTCGACAAAGGGGTCTTCCGAGGCTGGCTCACGGGAAATGGCCCCGAACAGGAGCTCAGGAAGCTCGCGCTGCACGAGGTCATTGGGATGTACGATCATTCTCTCGCGGTTAAGCTTGGCGTTCACTTCTTCTTGTGGGGTGGGGCAGTAAAGTTTCTGGGAACCAAGCGCCATCATGACAAGTGGTTGAATTCTACTGAAAACTATGATATCAAGGGTTGTTTTGCTATGTCGGAGTTAGGCCATGGAAGTAATGTTCGAGGAATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATCATGCAACGCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAATCAAGGGGTGCATGCATTTATTGCCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGATAATGTGAGGATACCCAGAGAGAATTTGTTGAATTCTGTGGCTGATGTTTCACCAAGTGGTGAATATTTGAGTGCAATAAAAAATGCAGATCAGAGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCGAGCATTCTCCATTACACCAAACGGGCCTGAAGTTTTACTGCTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGTATATGCAATGAGTTTTGCTGCAAATGAGCTGAAAATGATGTATGTCAACAGAACACCTAAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGCACTCTCCAGGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGATTAGCAAGGCACTCTTTGCAGAATATGTAGCAAGTCAGAAGAAAAAGAAACCATTCAGCGGTTTGGGATTAGAACACATGAACAAACCTTTGCCTGTTATCCCATCTCAGCTAACAAGTTCCTACATTAGGAACAGTGAATTTCAGATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAAGAGGTCTCAGAATATCAATCTCGTGGAGAAAGCAAAGAGTCTGCCTTCATTCTAAGTTATCAGCTCGCAGAAGAATTGGGCAGAGCTTTCTCAGAACGAGCAATATTAAAAACATTCATGGAGGCTGAGTCAACTGTACCTGCTGGTTCATTGAAGAATGTCTTGGGTCTATTGAGATCGTTGTATGCTGTGATATGTGTGGATGAAGATTCTGCCTTTCTTCGATATGGATACTTGTCAACAGAGAATGCTTCTGCAGTGAGGAAAGAAGTGCCAAAACTCTGTGCTGAACTTCGACCACACGCACTTGCCTTGGTCAGTTCCTTTGGTATTCCTGATGCATTTTTGAGCCCTATCGCATATAATTGGGTTGATTCAAATTCTTGGTCTTCTCAACTTTAG
>Glyma.12g120300.1.p sequence-type=predicted peptide transcript=Glyma.12g120300.1 locus=Glyma.12g120300 ID=Glyma.12g120300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTDNDRVSRRTEVLTNHLLRRTPPPSLLRPLPCLSYSPPELSNTISFDTREMRKLMDCHNLEDRDWLFSLILQSPLFNPRHRAGRFFVCPDYNQPMEHQRQATMKRIAYLLDKGVFRGWLTGNGPEQELRKLALHEVIGMYDHSLAVKLGVHFFLWGGAVKFLGTKRHHDKWLNSTENYDIKGCFAMSELGHGSNVRGIETVTTYDSNTGEFVINTPCESGQKYWIGGAANHATHTIVFSQLYINGSNQGVHAFIAQIRDSDGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPSGEYLSAIKNADQRFAAFLAPLTSGRVTIAVSAVYISKISLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKVYAMSFAANELKMMYVNRTPKSNKAIHIVSSAYKATLTWNNMRTLQECREACGGQGVKSENRVGNFMGEFDVHSTFEGDNNVLMQQISKALFAEYVASQKKKKPFSGLGLEHMNKPLPVIPSQLTSSYIRNSEFQIDLFHLRERDLLRRFAEEVSEYQSRGESKESAFILSYQLAEELGRAFSERAILKTFMEAESTVPAGSLKNVLGLLRSLYAVICVDEDSAFLRYGYLSTENASAVRKEVPKLCAELRPHALALVSSFGIPDAFLSPIAYNWVDSNSWSSQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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