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Report for Sequence Feature Glyma.12g116000

Feature Type:gene_model
Chromosome:Gm12
Start:11609351
stop:11616101
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g116000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03760.1AT Prefoldin chaperone subunit family protein JGI N/AIEA
GO:0000122GO-bp negative regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0010923GO-bp negative regulation of phosphatase activity EnsemblGenomesN/AIEA
GO:1903507GO-bp negative regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:0005665GO-cc DNA-directed RNA polymerase II, core complex EnsemblGenomesN/AIEA
GO:0016272GO-cc prefoldin complex EnsemblGenomesN/AIEA
GO:0016272GO-cc prefoldin complex JGI N/AIEA
GO:0003682GO-mf chromatin binding EnsemblGenomesN/AIEA
GO:0019212GO-mf phosphatase inhibitor activity EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding JGI N/AIEA
KOG3048 KOG Molecular chaperone Prefoldin, subunit 5 JGI N/AIEA
PTHR15111Panther RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN (NNX3) JGI N/AIEA
PF02996PFAM Prefoldin subunit JGI N/AIEA

Expression Patterns of Glyma.12g116000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g116000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g13190 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g116000
>Glyma.12g116000.2 sequence-type=transcript locus=Glyma.12g116000 ID=Glyma.12g116000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAATTCCTCCGAGAACCATAGTTTTTAAAAGCTGAGAGCGTCGAAGGCACAGCCGTCGCGTGGGAAGGTCCCAAAATAAATTAGGTTTGATTATTAGGGGAGGGAAAATGGATGAATCAACGAAGAAGGGGTCTGTGACCTCACTCGCCTCCCTCTTCCCAGTAGAGGAGGCGCAAAGGGCGGCCAAGCGCGTCGAAGACACCATTGCCGACAAGCAGAGCGAGCTCGACCGCCTACGAGGTTTCGCCACCGACAACAACAGCCTCATCAACCTCGTCCACAAGCTCCCCGAACAGCTCTCCCACGACATCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAGGTCGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCTGAGAGAACTTCAAAGCAAACCGTTGAGATTTTGCAGCGAAGAGGGAAGTCCTTGGATTCGCAGGTTGATTCTCTTGAGGCCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTTTCAATGCCACAGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATCTGGAGAAAGACTCTAACGAAGGGGAATTTAAATCAGGTCATCTGCAGCAAGAGGCTCCTAATTTGGGAAATGCTACAGCTGATGATGGGGAATATGCTCGTATGCTGGCTATAATGGATGAACTTGAAAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGAAAGTACTGGGGATTTCCATGATATATCATATCAGGAACATATTGATAACAAACTCCAAAATTCAAAAGATGTTCATCAAAGTGAACTACTGGACCAGATTAATAATAAAATTATAACAGCTGATCTTCCAAAAAAACAGAATCGTAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCAGTAGAATCTAGGGTCAAAGAGAGGGAAAATTTTGTAGAATACATTGATCCTAGTGAAAAGATTCCTGCTCGTTCTAAAGAAAGGTCAGTTCAAGCAACTACGGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCGCAAGGCTTTTACAGGCTCTATTATAGAGCATGCTGAGAATATAAAACCAACTACAAGACAACAAAGTTCAGCTTCTTCACAGGATTCTGGTTCTCAATCTTCAAAACCAGTCTCCAGATTCAAAATGCAGAGAAGATAGCTACAAGAAGATGAGAAGGTTGGATCTTTTTGTATTTGGCGATCTAATGGTGTAGCATCCATGATTCTAGGATGTGCTGCTTGAGATCAAAAGTAGAAAGAGTAACAGTGGGATAAATCGTTTTGACTTTTGAGCAACAAATTTTTGGACCTTTAAACAATGATTGTGGTTCAAACAGACTTAGCTATGTTTTATAGAATTGAATTGAGATAGTGTATTTTAATATATTATTTTTGAACCGTGAGCTGTATAGCATACGAAACATAAGTTGGCATCAACCTTGTCGCGTAACCGGTTTCACTGATTTGTCC

>Glyma.12g116000.3 sequence-type=transcript locus=Glyma.12g116000 ID=Glyma.12g116000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAATTCCTCCGAGAACCATAGTTTTTAAAAGCTGAGAGCGTCGAAGGCACAGCCGTCGCGTGGGAAGGTCCCAAGGGAGGGAAAATGGATGAATCAACGAAGAAGGGGTCTGTGACCTCACTCGCCTCCCTCTTCCCAGTAGAGGAGGCGCAAAGGGCGGCCAAGCGCGTCGAAGACACCATTGCCGACAAGCAGAGCGAGCTCGACCGCCTACGAGGTTTCGCCACCGACAACAACAGCCTCATCAACCTCGTCCACAAGCTCCCCGAACAGCTCTCCCACGACATCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAGGTCGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCTGAGAGAACTTCAAAGCAAACCGTTGAGATTTTGCAGCGAAGAGGGAAGTCCTTGGATTCGCAGGTTGATTCTCTTGAGGCCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTTTCAATGCCACAGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATCTGGAGAAAGACTCTAACGAAGGGGAATTTAAATCAGGTCATCTGCAGCAAGAGGCTCCTAATTTGGGAAATGCTACAGCTGATGATGGGGAATATGCTCGTATGCTGGCTATAATGGATGAACTTGAAAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGAAAGTACTGGGGATTTCCATGATATATCATATCAGGAACATATTGATAACAAACTCCAAAATTCAAAAGATGTTCATCAAAGTGAACTACTGGACCAGATTAATAATAAAATTATAACAGCTGATCTTCCAAAAAAACAGAATCGTAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCAGTAGAATCTAGGGTCAAAGAGAGGGAAAATTTTGTAGAATACATTGATCCTAGTGAAAAGATTCCTGCTCGTTCTAAAGAAAGGTCAGTTCAAGCAACTACGGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCGCAAGGCTTTTACAGGCTCTATTATAGAGCATGCTGAGAATATAAAACCAACTACAAGACAACAAAGTTCAGCTTCTTCACAGGATTCTGGTTCTCAATCTTCAAAACCAGTCTCCAGATTCAAAATGCAGAGAAGATAGCTACAAGAAGATGAGAAGGTTGGATCTTTTTGTATTTGGCGATCTAATGGTGTAGCATCCATGATTCTAGGATGTGCTGCTTGAGATCAAAAGTAGAAAGAGTAACAGTGGGATAAATCGTTTTGACTTTTGAGCAACAAATTTTTGGACCTTTAAACAATGATTGTGGTTCAAACAGACTTAGCTATGTTTTATAGAATTGAATTGAGATAGTGTATTTTAATATATTATTTTTGAACCGTGAGCTGTATAGCATACGAAACATAAGTTGGCATCAACCTTGTCGCGTAACCGGTTTCACTGATTTGTCC
Coding sequences of Glyma.12g116000
>Glyma.12g116000.1 sequence-type=CDS polypeptide=Glyma.12g116000.1.p locus=Glyma.12g116000 ID=Glyma.12g116000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAATCAACGAAGAAGGGGTCTGTGACCTCACTCGCCTCCCTCTTCCCAGTAGAGGAGGCGCAAAGGGCGGCCAAGCGCGTCGAAGACACCATTGCCGACAAGCAGAGCGAGCTCGACCGCCTACGAGGTTTCGCCACCGACAACAACAGCCTCATCAACCTCGTCCACAAGCTCCCCGAACAGCTCTCCCACGACATCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAGGTCGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCTGAGAGAACTTCAAAGCAAACCGTTGAGATTTTGCAGCGAAGAGGGAAGTCCTTGGATTCGCAGGTTGATTCTCTTGAGGCCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTTTCAATGCCACAGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATCTGGAGAAAGACTCTAACGAAGGGGAATTTAAATCAGGTCATCTGCAGCAAGAGGCTCCTAATTTGGGAAATGCTACAGCTGATGATGGGGAATATGCTCGTATGCTGGCTATAATGGATGAACTTGAAAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGAAAGTACTGGGGATTTCCATGATATATCATATCAGGAACATATTGATAACAAACTCCAAAATTCAAAAGATGTTCATCAAAGTGAACTACTGGACCAGATTAATAATAAAATTATAACAGCTGATCTTCCAAAAAAACAGAATCGTAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCAGTAGAATCTAGGGTCAAAGAGAGGGAAAATTTTGTAGAATACATTGATCCTAGTGAAAAGATTCCTGCTCGTTCTAAAGAAAGGTCAGTTCAAGCAACTACGGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCGCAAGGCTTTTACAGGCTCTATTATAGAGCATGCTGAGAATATAAAACCAACTACAAGACAACAAAGTTCAGCTTCTTCACAGGATTCTGGTTCTCAATCTTCAAAACCAGTCTCCAGATTCAAAATGCAGAGAAGATAG

>Glyma.12g116000.2 sequence-type=CDS polypeptide=Glyma.12g116000.2.p locus=Glyma.12g116000 ID=Glyma.12g116000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAATCAACGAAGAAGGGGTCTGTGACCTCACTCGCCTCCCTCTTCCCAGTAGAGGAGGCGCAAAGGGCGGCCAAGCGCGTCGAAGACACCATTGCCGACAAGCAGAGCGAGCTCGACCGCCTACGAGGTTTCGCCACCGACAACAACAGCCTCATCAACCTCGTCCACAAGCTCCCCGAACAGCTCTCCCACGACATCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAGGTCGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCTGAGAGAACTTCAAAGCAAACCGTTGAGATTTTGCAGCGAAGAGGGAAGTCCTTGGATTCGCAGGTTGATTCTCTTGAGGCCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTTTCAATGCCACAGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATCTGGAGAAAGACTCTAACGAAGGGGAATTTAAATCAGGTCATCTGCAGCAAGAGGCTCCTAATTTGGGAAATGCTACAGCTGATGATGGGGAATATGCTCGTATGCTGGCTATAATGGATGAACTTGAAAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGAAAGTACTGGGGATTTCCATGATATATCATATCAGGAACATATTGATAACAAACTCCAAAATTCAAAAGATGTTCATCAAAGTGAACTACTGGACCAGATTAATAATAAAATTATAACAGCTGATCTTCCAAAAAAACAGAATCGTAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCAGTAGAATCTAGGGTCAAAGAGAGGGAAAATTTTGTAGAATACATTGATCCTAGTGAAAAGATTCCTGCTCGTTCTAAAGAAAGGTCAGTTCAAGCAACTACGGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCGCAAGGCTTTTACAGGCTCTATTATAGAGCATGCTGAGAATATAAAACCAACTACAAGACAACAAAGTTCAGCTTCTTCACAGGATTCTGGTTCTCAATCTTCAAAACCAGTCTCCAGATTCAAAATGCAGAGAAGATAG

>Glyma.12g116000.3 sequence-type=CDS polypeptide=Glyma.12g116000.3.p locus=Glyma.12g116000 ID=Glyma.12g116000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAATCAACGAAGAAGGGGTCTGTGACCTCACTCGCCTCCCTCTTCCCAGTAGAGGAGGCGCAAAGGGCGGCCAAGCGCGTCGAAGACACCATTGCCGACAAGCAGAGCGAGCTCGACCGCCTACGAGGTTTCGCCACCGACAACAACAGCCTCATCAACCTCGTCCACAAGCTCCCCGAACAGCTCTCCCACGACATCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAGGTCGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCTGAGAGAACTTCAAAGCAAACCGTTGAGATTTTGCAGCGAAGAGGGAAGTCCTTGGATTCGCAGGTTGATTCTCTTGAGGCCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTTTCAATGCCACAGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATCTGGAGAAAGACTCTAACGAAGGGGAATTTAAATCAGGTCATCTGCAGCAAGAGGCTCCTAATTTGGGAAATGCTACAGCTGATGATGGGGAATATGCTCGTATGCTGGCTATAATGGATGAACTTGAAAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGAAAGTACTGGGGATTTCCATGATATATCATATCAGGAACATATTGATAACAAACTCCAAAATTCAAAAGATGTTCATCAAAGTGAACTACTGGACCAGATTAATAATAAAATTATAACAGCTGATCTTCCAAAAAAACAGAATCGTAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCAGTAGAATCTAGGGTCAAAGAGAGGGAAAATTTTGTAGAATACATTGATCCTAGTGAAAAGATTCCTGCTCGTTCTAAAGAAAGGTCAGTTCAAGCAACTACGGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCGCAAGGCTTTTACAGGCTCTATTATAGAGCATGCTGAGAATATAAAACCAACTACAAGACAACAAAGTTCAGCTTCTTCACAGGATTCTGGTTCTCAATCTTCAAAACCAGTCTCCAGATTCAAAATGCAGAGAAGATAG
Predicted protein sequences of Glyma.12g116000
>Glyma.12g116000.1.p sequence-type=predicted peptide transcript=Glyma.12g116000.1 locus=Glyma.12g116000 ID=Glyma.12g116000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDESTKKGSVTSLASLFPVEEAQRAAKRVEDTIADKQSELDRLRGFATDNNSLINLVHKLPEQLSHDIMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILQRRGKSLDSQVDSLEANIKDLEAEASFFNATASQVAEGLVEIREDYLEKDSNEGEFKSGHLQQEAPNLGNATADDGEYARMLAIMDELEKEELAAESGNHSDQNDESTGDFHDISYQEHIDNKLQNSKDVHQSELLDQINNKIITADLPKKQNRKEDITDQLNFASLAVESRVKERENFVEYIDPSEKIPARSKERSVQATTASKTEVRHQTSQPSFDSRKAFTGSIIEHAENIKPTTRQQSSASSQDSGSQSSKPVSRFKMQRR*

>Glyma.12g116000.2.p sequence-type=predicted peptide transcript=Glyma.12g116000.2 locus=Glyma.12g116000 ID=Glyma.12g116000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDESTKKGSVTSLASLFPVEEAQRAAKRVEDTIADKQSELDRLRGFATDNNSLINLVHKLPEQLSHDIMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILQRRGKSLDSQVDSLEANIKDLEAEASFFNATASQVAEGLVEIREDYLEKDSNEGEFKSGHLQQEAPNLGNATADDGEYARMLAIMDELEKEELAAESGNHSDQNDESTGDFHDISYQEHIDNKLQNSKDVHQSELLDQINNKIITADLPKKQNRKEDITDQLNFASLAVESRVKERENFVEYIDPSEKIPARSKERSVQATTASKTEVRHQTSQPSFDSRKAFTGSIIEHAENIKPTTRQQSSASSQDSGSQSSKPVSRFKMQRR*

>Glyma.12g116000.3.p sequence-type=predicted peptide transcript=Glyma.12g116000.3 locus=Glyma.12g116000 ID=Glyma.12g116000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDESTKKGSVTSLASLFPVEEAQRAAKRVEDTIADKQSELDRLRGFATDNNSLINLVHKLPEQLSHDIMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILQRRGKSLDSQVDSLEANIKDLEAEASFFNATASQVAEGLVEIREDYLEKDSNEGEFKSGHLQQEAPNLGNATADDGEYARMLAIMDELEKEELAAESGNHSDQNDESTGDFHDISYQEHIDNKLQNSKDVHQSELLDQINNKIITADLPKKQNRKEDITDQLNFASLAVESRVKERENFVEYIDPSEKIPARSKERSVQATTASKTEVRHQTSQPSFDSRKAFTGSIIEHAENIKPTTRQQSSASSQDSGSQSSKPVSRFKMQRR*






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