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Report for Sequence Feature Glyma.12g114600

Feature Type:gene_model
Chromosome:Gm12
Start:11401701
stop:11405058
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g114600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34050.1AT JGI N/AIEA
GO:0033615GO-bp mitochondrial proton-transporting ATP synthase complex assembly EnsemblGenomesN/AIEA
GO:0065003GO-bp protein-containing complex assembly EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion JGI N/AIEA
KOG3281 KOG Mitochondrial F1-ATPase assembly protein JGI N/AIEA
PTHR13126Panther CHAPERONE ATP11 JGI N/AIEA
PF06644PFAM ATP11 protein JGI N/AIEA

Expression Patterns of Glyma.12g114600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g114600 not represented in the dataset
Glyma.12g114600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g114600
ParalogEvidenceComments
Glyma.06g291400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g114600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g12960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g114600
>Glyma.12g114600.1 sequence-type=CDS polypeptide=Glyma.12g114600.1.p locus=Glyma.12g114600 ID=Glyma.12g114600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGGGTGTCTCCAACCTCCACAATTTGGAGGACCATAGTCTCCAAGGCCAGAAAAAACGTGTTTTTCATCAACGACCCTTTTGCTGCGCGCTCCTTCTCTGCGGTTCCCGTCGTGGCAGCCGCCAAGAAATTGCATCAACCAGAGATTCCAAGCGATTTCCAGAAATGGGGTTCGGTTGGATTCTGCAGAACGTCGAAATTTGCCTCTGGGTTCAATCCACTTCAACCGAAGCCGTTGGATTCTATTGTAGATGTCCACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATCACTTGCTGGAGCATAGAGCTTCAGAATGCCGATATTTTGTCATTCCTTTATGGAGGGGAAGTGGATACACGACAATGTTTGTTCAAGTCCAGACGCCACACATGATTTTTACAGGTCTTGAAGATTACAAGGCCAGAGGAACACAAGCAGCCCCTTACTTTACTTTGACCTTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTTGTATTTACCAGCAAGCTTACTGACCCAGAAGCAAAATGGCTTTTGGAAACTGCTCAGTCTTTTTATTTGAATGATGCGAGGTACAAACTGGTTGAGAGGTTCAACAGGCAAACACATGATTTTGAGTTCAAAGATGTCTTGCAAGTATTGGACATGCCTATTTTGTAA
Predicted protein sequences of Glyma.12g114600
>Glyma.12g114600.1.p sequence-type=predicted peptide transcript=Glyma.12g114600.1 locus=Glyma.12g114600 ID=Glyma.12g114600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRVSPTSTIWRTIVSKARKNVFFINDPFAARSFSAVPVVAAAKKLHQPEIPSDFQKWGSVGFCRTSKFASGFNPLQPKPLDSIVDVHRLKDRYPEDIASVWDDYHIGRGHIGATMKAKLYHLLEHRASECRYFVIPLWRGSGYTTMFVQVQTPHMIFTGLEDYKARGTQAAPYFTLTFYTEFAESKDLVLIRGDVVFTSKLTDPEAKWLLETAQSFYLNDARYKLVERFNRQTHDFEFKDVLQVLDMPIL*






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