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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22930.1 | AT | pyrimidin 4 | JGI | N/A | IEA |
| GO:0006207 | GO-bp | 'de novo' pyrimidine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006221 | GO-bp | pyrimidine nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0019856 | GO-bp | pyrimidine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0004151 | GO-mf | dihydroorotase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0016812 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | EnsemblGenomes | N/A | IEA |
| KOG2902 | KOG | Dihydroorotase | JGI | N/A | IEA |
| PTHR11647 | Panther | AMINOHYDROLASE | JGI | N/A | IEA |
| PTHR11647:SF42 | Panther | JGI | N/A | IEA | |
| PF01979 | PFAM | Amidohydrolase family | JGI | N/A | IEA |
| PWY-5686 | SoyCyc9 | UMP biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-162 | SoyCyc9 | superpathway of pyrimidine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-59501 | SoyCyc9-rxn | dihydroorotase | Plant Metabolic Network | ISS |
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Glyma.12g114500 not represented in the dataset |
Glyma.12g114500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g291600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g12950 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g114500.2 sequence-type=transcript locus=Glyma.12g114500 ID=Glyma.12g114500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AATCTCAACGCGTAACAAAATATCCCAAACTCTCACTCGTCGACGGCCACCGGATCGACCTCAATTCGCCGTCGTCCAATCGCTCTCAGTTCCACCGCCTCCGCCGCCGGCATCCAATTCAGTTTGGCCTTGCATCTCTCTCAGGTATTAAGATTCTACTAAAAAAAAGGTTGATCAGCGTAAAGATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGATTTGCTGTGTCTATTTGAAAGTTTGGTATCCTTCAGCTTAAATTATTGATTGCTGAGATGAGAATTTATGCAGCGTTCAAGAACTAGAGTCAAGCAATTTTGTTCTAATTTTATCAGTCAGTTCTGCATTTATTTTGCAGATTGTTCTCATTTCTATTTCCTAGGTCAGGTGAATTTAAGTATGAACCAGAACACCCACTGTGACTAATAAATTATGGGAATTTATATAGTATTCAGAGCTATGGTAATTTTGTAGTTCTAATTTGATCAATCAACTATGCATGAATTTTTCAGATTTGCCTTATTTCCATTTCCTGTTCATGGGTCTGAGCTGAATTCCTGTATGAATCCAAGTGCCCCTTGGCCACATGACACCGCATCA
>Glyma.12g114500.1 sequence-type=CDS polypeptide=Glyma.12g114500.1.p locus=Glyma.12g114500 ID=Glyma.12g114500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAACCACATTCTTCGACTGAAATAGTGTTCAAGGAGTGTGTGTGCGCGCGCGCGTGTATTAAGATTCTACTAAAAAAAAGGTTGATCAGCGTAAAGATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGA >Glyma.12g114500.2 sequence-type=CDS polypeptide=Glyma.12g114500.2.p locus=Glyma.12g114500 ID=Glyma.12g114500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGA
>Glyma.12g114500.1.p sequence-type=predicted peptide transcript=Glyma.12g114500.1 locus=Glyma.12g114500 ID=Glyma.12g114500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKPHSSTEIVFKECVCARACIKILLKKRLISVKMELTITQPDDWHLHLRDGSLLEAVLPHSAKHFGRAIVMPNLKPPITTTSAAVAYRESILKAIPKDSNFTPLMSLYLTDVTTPDEIKLAKKSGLVYGVKLYPAGATTNSQDGVTDLFGNCFSVLEEMAEQNLPLLVHGEVTDSNVDIFDREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVESCKEGYVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFLGTDSAPHDRRKKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKSKIKLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEALPC* >Glyma.12g114500.2.p sequence-type=predicted peptide transcript=Glyma.12g114500.2 locus=Glyma.12g114500 ID=Glyma.12g114500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELTITQPDDWHLHLRDGSLLEAVLPHSAKHFGRAIVMPNLKPPITTTSAAVAYRESILKAIPKDSNFTPLMSLYLTDVTTPDEIKLAKKSGLVYGVKLYPAGATTNSQDGVTDLFGNCFSVLEEMAEQNLPLLVHGEVTDSNVDIFDREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVESCKEGYVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFLGTDSAPHDRRKKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKSKIKLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEALPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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