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Report for Sequence Feature Glyma.12g107700

Feature Type:gene_model
Chromosome:Gm12
Start:9855245
stop:9860062
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g107700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03340.1AT Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008375GO-mf acetylglucosaminyltransferase activity EnsemblGenomesN/AIEA
GO:0008375GO-mf acetylglucosaminyltransferase activity JGI N/AIEA
KOG0799 KOG Branching enzyme JGI N/AIEA
PTHR19297Panther GLYCOSYLTRANSFERASE 14 FAMILY MEMBER JGI N/AIEA
PTHR19297:SF2Panther JGI N/AIEA
PF02485PFAM Core-2/I-Branching enzyme JGI N/AIEA
GN7V-68033SoyCyc9-rxn UDP-glucuronosyltransferase 2B7 Plant Metabolic Network ISS

Expression Patterns of Glyma.12g107700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g107700
ParalogEvidenceComments
Glyma.06g297300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g107700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g11780 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g107700
>Glyma.12g107700.2 sequence-type=transcript locus=Glyma.12g107700 ID=Glyma.12g107700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAGCAAAGTCACCACTCTTGAATCTGTGGCCACCCAGATTGAGAAGAATGGCCAAAACAACAACAAAAGTACTAAAACAACACAATCTCACCACTCTTTCTAGAAAACCCTGTTCCTGACAACACCTCCTCATAACCCTCAAACTCAAACACATCATTAACAAAAATTCCAATCACTTTGAATCCTCTCTCTCTTTCTCTCTTGTTCTCCTTGAAACTAACCATCTCTTGAATCTGAAGTTACCCAAGACTTGCCTTTCAAGTGTGTTCAGTTTCATGTATTGGTCTTATATTGGTGTATTTAATTTTGGGATGACATAGATCTTGCCTTGGGAACAGTAAAAGAAAGCAGAAAAAGCATGTTTGCATCTCTACAGGTGAAATCTGAGGTGTGGATTGTTCTTTTTTGAGTTAAAATTCCAATATAGGAGTTTACTTGTAAAGAGACCGAAGATTGACTTATTGTGAAGTTTCCTCCTCCTTTTGCGCCTTAAAAAAAAATTGTTCCTTTCTGATTTGGGAGTAATCAGATCTGAGCCTGTTATCTAGAGAAAAGATGGACCCTTTTCTGCATATGTGGTAACTATACTTGTTAAGAAGGTGGATTTGGTTCAATTGCTGAATCATTGTAGTTCTCTTCTTATCTTGCAAATATTAGTAGGGTTCTTGCAGATTTGGGTTTAAACTCATCTGCAGGAACTGAGAACAGGTAGAGATCTTGGTTTTTGCCCTTGAAGTGAAGGGGCTCTGAAGTTTGATCTTGGTTTAGCTGTGCCACAAGAGTATGAGGAAAAATGTCGGTTCTCATTCAGGAAGGATGTTTAGTGATAAGAAGTGGATTCTCCCCTTTTTTGCAAGTTTGATTATATCTATGAGTCTAGTTCTGACAGCCATTCTTGGATTACTTAGTTCTGATGGCGGGGGAGAGCAGTCACCATTTGAAATCATTTCCTTCAAGAGATCAGAGGATTCAAGTGGATATTTTGTGGAATCAGATATAGAGAAGTCCTTAAATGTTAGTGTGGTGAAAAGGGAGGCACCAAGGTTTGCATATCTTATTTCAGGCACCAAGGGTGATAGTCATAGGATGATGAGGACATTAGAGGCAGTGTACCACCCGAGGAATCAATATATCTTGCACTTAGATCTTGAGGCGCCACCCCGGGAAAGGTTGGAATTGGCAAATGCAGTGAAAGCTGATCCAATATTTCGTGGGGTGGAGAATGTGCGTGTTATGTCTCAATCCAATTTGGTAACTTATAAGGGTCCTACGATGATTGCTTGTACCCTCCAAGCTATTGCAATATTGTTGAAGGAAAGTTCAGAGTGGGACTGGTTTATTAACCTCAGTGCCTCAGATTATCCCCTTATGACACAGGATGATTTGCTTCATGTTTTCTCAAATCTGTCAAGAAATCTCAATTTCATTGAACATACACGCATTGCTGGTTGGAAACTGAACCAAAGAGCAAGACCCATCATTATTGACCCTGCTCTTTACTTATCAAAGAAATCTGATTTAGCATTGACTACTCAAAGAAGAACACTTCCAACATCTTTTAAACTGTTTACTGGTTCAGCTTGGGTTGTACTGACTCGGTCCTTTGTGGAGTACTGCATATGGGGATGGGATAATTTTCCACGGACTATGCTAATGTATTATACAAATTTTATCTCCTCGCCAGAGGGATATTTTCACACTGTCATTTGTAACACTGAGGAATTCCATCACACGGCGATAAACCACGATCTTCACTACATTGCTTGGGACACTCCTCCAAAGCAGCATCCCATCTCTTTAACTGTGAAGGACTTTGACAAAATGGTTAAAAGCAAGGCACTCTTTGCGCGCAAATTTGCAAAGGAGGATCCAGTGTTAGACAAGATTGACAAAGAACTTCTGGGGCGCACACATAGATTTTCACCTGGTGCATGGTGTGTTGGGAACACAGATGGTGGGGCTGACCCTTGTTCTGTTCGTGGCAATGATACAATGTTTAGGCCAGGACCTGGTGCTGAGAGGCTACGTGAGCTGCTTCAGGTGCTGTTATCTAAAGAATCTCTAAGCAAGCAGTGTTTGTGACAAAGACGTACCCTCCAAGTAGGATGAATGATGTCAAGTGTACATAAGTCTGATTATAGATCATATATATCTGATGTAAAAGGTCAGAATTTTGTGTTCAATATAGGTTCATATTAACAATCAACAAGCACTCACATCAGCAGTTTTGGTGCTTGTTTCGGTCTAGACATGCTTTTGGTTGCAGTGCCGGGCAACCATTTATGCAATTACAACATTTTTTGTTGAGTTACAAAATGGCCATTAAATTTCAGTGGACTTTTGGTTGGTTATCTATTTTCTTATGGATATATACTTA
Coding sequences of Glyma.12g107700
>Glyma.12g107700.1 sequence-type=CDS polypeptide=Glyma.12g107700.1.p locus=Glyma.12g107700 ID=Glyma.12g107700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAAAAATGTCGGTTCTCATTCAGGAAGGATGTTTAGTGATAAGAAGTGGATTCTCCCCTTTTTTGCAAGTTTGATTATATCTATGAGTCTAGTTCTGACAGCCATTCTTGGATTACTTAGTTCTGATGGCGGGGGAGAGCAGTCACCATTTGAAATCATTTCCTTCAAGAGATCAGAGGATTCAAGTGGATATTTTGTGGAATCAGATATAGAGAAGTCCTTAAATGTTAGTGTGGTGAAAAGGGAGGCACCAAGGTTTGCATATCTTATTTCAGGCACCAAGGGTGATAGTCATAGGATGATGAGGACATTAGAGGCAGTGTACCACCCGAGGAATCAATATATCTTGCACTTAGATCTTGAGGCGCCACCCCGGGAAAGGTTGGAATTGGCAAATGCAGTGAAAGCTGATCCAATATTTCGTGGGGTGGAGAATGTGCGTGTTATGTCTCAATCCAATTTGGTAACTTATAAGGGTCCTACGATGATTGCTTGTACCCTCCAAGCTATTGCAATATTGTTGAAGGAAAGTTCAGAGTGGGACTGGTTTATTAACCTCAGTGCCTCAGATTATCCCCTTATGACACAGGATGATTTGCTTCATGTTTTCTCAAATCTGTCAAGAAATCTCAATTTCATTGAACATACACGCATTGCTGGTTGGAAACTGAACCAAAGAGCAAGACCCATCATTATTGACCCTGCTCTTTACTTATCAAAGAAATCTGATTTAGCATTGACTACTCAAAGAAGAACACTTCCAACATCTTTTAAACTGTTTACTGGTTCAGCTTGGGTTGTACTGACTCGGTCCTTTGTGGAGTACTGCATATGGGGATGGGATAATTTTCCACGGACTATGCTAATGTATTATACAAATTTTATCTCCTCGCCAGAGGGATATTTTCACACTGTCATTTGTAACACTGAGGAATTCCATCACACGGCGATAAACCACGATCTTCACTACATTGCTTGGGACACTCCTCCAAAGCAGCATCCCATCTCTTTAACTGTGAAGGACTTTGACAAAATGGTTAAAAGCAAGGCACTCTTTGCGCGCAAATTTGCAAAGGAGGATCCAGTGTTAGACAAGATTGACAAAGAACTTCTGGGGCGCACACATAGATTTTCACCTGGTGCATGGTGTGTTGGGAACACAGATGGTGGGGCTGACCCTTGTTCTGTTCGTGGCAATGATACAATGTTTAGGCCAGGACCTGGTGCTGAGAGGCTACGTGAGCTGCTTCAGGTGCTGTTATCTAAAGAATCTCTAAGCAAGCAGTGTTTGTGA

>Glyma.12g107700.2 sequence-type=CDS polypeptide=Glyma.12g107700.2.p locus=Glyma.12g107700 ID=Glyma.12g107700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAAAAATGTCGGTTCTCATTCAGGAAGGATGTTTAGTGATAAGAAGTGGATTCTCCCCTTTTTTGCAAGTTTGATTATATCTATGAGTCTAGTTCTGACAGCCATTCTTGGATTACTTAGTTCTGATGGCGGGGGAGAGCAGTCACCATTTGAAATCATTTCCTTCAAGAGATCAGAGGATTCAAGTGGATATTTTGTGGAATCAGATATAGAGAAGTCCTTAAATGTTAGTGTGGTGAAAAGGGAGGCACCAAGGTTTGCATATCTTATTTCAGGCACCAAGGGTGATAGTCATAGGATGATGAGGACATTAGAGGCAGTGTACCACCCGAGGAATCAATATATCTTGCACTTAGATCTTGAGGCGCCACCCCGGGAAAGGTTGGAATTGGCAAATGCAGTGAAAGCTGATCCAATATTTCGTGGGGTGGAGAATGTGCGTGTTATGTCTCAATCCAATTTGGTAACTTATAAGGGTCCTACGATGATTGCTTGTACCCTCCAAGCTATTGCAATATTGTTGAAGGAAAGTTCAGAGTGGGACTGGTTTATTAACCTCAGTGCCTCAGATTATCCCCTTATGACACAGGATGATTTGCTTCATGTTTTCTCAAATCTGTCAAGAAATCTCAATTTCATTGAACATACACGCATTGCTGGTTGGAAACTGAACCAAAGAGCAAGACCCATCATTATTGACCCTGCTCTTTACTTATCAAAGAAATCTGATTTAGCATTGACTACTCAAAGAAGAACACTTCCAACATCTTTTAAACTGTTTACTGGTTCAGCTTGGGTTGTACTGACTCGGTCCTTTGTGGAGTACTGCATATGGGGATGGGATAATTTTCCACGGACTATGCTAATGTATTATACAAATTTTATCTCCTCGCCAGAGGGATATTTTCACACTGTCATTTGTAACACTGAGGAATTCCATCACACGGCGATAAACCACGATCTTCACTACATTGCTTGGGACACTCCTCCAAAGCAGCATCCCATCTCTTTAACTGTGAAGGACTTTGACAAAATGGTTAAAAGCAAGGCACTCTTTGCGCGCAAATTTGCAAAGGAGGATCCAGTGTTAGACAAGATTGACAAAGAACTTCTGGGGCGCACACATAGATTTTCACCTGGTGCATGGTGTGTTGGGAACACAGATGGTGGGGCTGACCCTTGTTCTGTTCGTGGCAATGATACAATGTTTAGGCCAGGACCTGGTGCTGAGAGGCTACGTGAGCTGCTTCAGGTGCTGTTATCTAAAGAATCTCTAAGCAAGCAGTGTTTGTGA
Predicted protein sequences of Glyma.12g107700
>Glyma.12g107700.1.p sequence-type=predicted peptide transcript=Glyma.12g107700.1 locus=Glyma.12g107700 ID=Glyma.12g107700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRKNVGSHSGRMFSDKKWILPFFASLIISMSLVLTAILGLLSSDGGGEQSPFEIISFKRSEDSSGYFVESDIEKSLNVSVVKREAPRFAYLISGTKGDSHRMMRTLEAVYHPRNQYILHLDLEAPPRERLELANAVKADPIFRGVENVRVMSQSNLVTYKGPTMIACTLQAIAILLKESSEWDWFINLSASDYPLMTQDDLLHVFSNLSRNLNFIEHTRIAGWKLNQRARPIIIDPALYLSKKSDLALTTQRRTLPTSFKLFTGSAWVVLTRSFVEYCIWGWDNFPRTMLMYYTNFISSPEGYFHTVICNTEEFHHTAINHDLHYIAWDTPPKQHPISLTVKDFDKMVKSKALFARKFAKEDPVLDKIDKELLGRTHRFSPGAWCVGNTDGGADPCSVRGNDTMFRPGPGAERLRELLQVLLSKESLSKQCL*

>Glyma.12g107700.2.p sequence-type=predicted peptide transcript=Glyma.12g107700.2 locus=Glyma.12g107700 ID=Glyma.12g107700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRKNVGSHSGRMFSDKKWILPFFASLIISMSLVLTAILGLLSSDGGGEQSPFEIISFKRSEDSSGYFVESDIEKSLNVSVVKREAPRFAYLISGTKGDSHRMMRTLEAVYHPRNQYILHLDLEAPPRERLELANAVKADPIFRGVENVRVMSQSNLVTYKGPTMIACTLQAIAILLKESSEWDWFINLSASDYPLMTQDDLLHVFSNLSRNLNFIEHTRIAGWKLNQRARPIIIDPALYLSKKSDLALTTQRRTLPTSFKLFTGSAWVVLTRSFVEYCIWGWDNFPRTMLMYYTNFISSPEGYFHTVICNTEEFHHTAINHDLHYIAWDTPPKQHPISLTVKDFDKMVKSKALFARKFAKEDPVLDKIDKELLGRTHRFSPGAWCVGNTDGGADPCSVRGNDTMFRPGPGAERLRELLQVLLSKESLSKQCL*






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