SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.12g102800

Feature Type:gene_model
Chromosome:Gm12
Start:9151380
stop:9157067
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.12g102800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08070.1AT OTP82 JGI N/AIEA
PTHR24015PantherFam OS07G0578800 PROTEIN-RELATED JGI N/AIEA
PF01535Pfam PPR repeat JGI N/AIEA
PF13041Pfam PPR repeat family JGI N/AIEA
PF14432Pfam DYW family of nucleic acid deaminases JGI N/AIEA

Proteins Associated with Glyma.12g102800
LocusGene SymbolProtein Name
PPR116 Psudo-Response Regulator gene 116

Gene model name correspondences to Glyma.12g102800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g11120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g102800
>Glyma.12g102800.1 sequence-type=CDS polypeptide=Glyma.12g102800.1.p locus=Glyma.12g102800 id=Glyma.12g102800.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCACTCCTTAAGACAACAGCAACCCTTATTCCCAAACCTTCTTCCACCTCTACTTTCGATTCTCTACAATGTGGAACCTTACTCCAATCCCTCACCAACTCCAAATCCTTAACCCAAGCCCTACAACTCCACGCTCACGTCACCACCGGCGGCACCCTCCGCCGCAACACCTACCTCGCCACCAAGCTCGCCGCATGCTACGCCGTCTGCGGCCACATGCCCTATGCCCAACACATCTTTGACCAAATCGTCCTCAAGAACTCGTTTCTCTGGAACTCCATGATCAGGGGCTACGCCTGCAACAACTCTCCCTCGAGGGCCCTTTTTCTATACCTCAAAATGCTGCATTTTGGACAAAAGCCTGATAACTTCACCTACCCTTTTGTCCTTAAGGCATGTGGGGACCTTCTGCTTCGCGAAATGGGTAGAAAGGTTCATGCTTTGGTGGTGGTTGGTGGGTTGGAGGAGGATGTTTATGTAGGCAACTCGATACTTTCGATGTACTTTAAGTTTGGTGACGTGGAAGCTGCGCGGGTTGTGTTTGATAGAATGCTTGTGAGGGACTTGACTTCTTGGAACACCATGATGTCGGGGTTTGTGAAGAATGGGGAGGCAAGGGGTGCTTTTGAGGTTTTTGGGGACATGAGAAGGGATGGTTTTGTGGGAGATAGGACCACCTTGCTTGCTCTTCTCTCTGCTTGTGGGGATGTTATGGATTTGAAGGTGGGGAAAGAGATTCATGGTTATGTTGTTAGGAATGGTGAGAGTGGGAGAGTCTGTAATGGGTTTCTGATGAATTCAATTATTGACATGTACTGCAATTGTGAGTCTGTGTCTTGTGCAAGGAAGTTGTTTGAAGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCTTTGATTTCGGGGTATGAGAAGTGCGGGGATGCTTTTCAAGCTCTTGAGCTTTTCGGTCGGATGGTTGTAGTAGGTGCAGTGCCTGATGAGGTGACTGTTATTTCTGTGCTTGCGGCTTGTAATCAAATCTCGGCATTGCGGTTGGGCGCGACTGTGCAGTCATATGTTGTTAAGAGGGGTTATGTTGTGAATGTTGTTGTGGGAACGGCACTTATTGGCATGTATGCTAACTGTGGAAGTTTGGTTTGTGCTTGTCGTGTGTTTGATGAGATGCCTGAGAAAAATTTGCCTGCTTGTACGGTTATGGTTACTGGATTTGGAATTCATGGGAGGGGGAGAGAGGCCATCTCCATTTTTTATGAAATGCTAGGTAAAGGTGTGACACCAGATGAGGGCATTTTCACTGCAGTTTTATCGGCTTGTAGTCATTCTGGATTAGTGGACGAGGGTAAAGAGATTTTCTACAAAATGACTAGAGACTATAGTGTGGAGCCTAGACCAACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACTTAGATGAAGCTTATGCAGTTATAGAGAATATGAAATTGAAACCTAATGAGGATGTGTGGACTGCTCTTCTTTCTGCATGCAGATTACATCGGAATGTCAAGTTAGCCGTGATCTCGGCGCAGAAGCTTTTTGAATTGAATCCAGATGGAGTGAGTGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACGGTGGGAAGATGTTGAAAACGTGAGGGCATTGGTGGCAAAAAGAAGATTGAGGAAACCACCTAGTTACAGTTTTGTTGAGCTAAATAAGATGGTTCATCAATTTTTTGTTGGGGATACTTCCCATGAACAGTCGGATGATATTTATGCCAAATTGAAAGACTTGAATGAGCAGCTGAAGAAAGCTGGATACAAACCTGACACCAGTTTAGTTCTCTACGATGTTGAGGAAGAAATAAAGGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAATACTGGTCCGGGGACCACTATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACGGTAATAAAAATGATTTCTAAGCTCACAAATCGGGAGATTATTATGCGAGATATTTGTAGGTTTCACCATTTTAGAGATGGCTTATGCTCATGTGGTGGATATTGGTGA
Predicted protein sequences of Glyma.12g102800
>Glyma.12g102800.1.p sequence-type=predicted peptide transcript=Glyma.12g102800.1 locus=Glyma.12g102800 id=Glyma.12g102800.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSLLKTTATLIPKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo