SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.12g102800

Feature Type:gene_model
Chromosome:Gm12
Start:9167421
stop:9170155
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g102800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08070.1AT Tetratricopeptide repeat (TPR)-like superfamily protein JGI N/AIEA
GO:0016554GO-bp cytidine to uridine editing EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:1900865GO-bp chloroplast RNA modification EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0004519GO-mf endonuclease activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
PTHR24015Panther FAMILY NOT NAMED JGI N/AIEA
PF01535PFAM PPR repeat JGI N/AIEA

Proteins Associated with Glyma.12g102800
LocusGene SymbolProtein Name
PPR116 Psudo-Response Regulator gene 116

Expression Patterns of Glyma.12g102800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g102800
ParalogEvidenceComments
Glyma.06g301600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g102800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g11120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g102800
>Glyma.12g102800.1 sequence-type=CDS polypeptide=Glyma.12g102800.1.p locus=Glyma.12g102800 ID=Glyma.12g102800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACTCCTTAAGACAACAGCAACCCTTATTCCCAAACCTTCTTCCACCTCTACTTTCGATTCTCTACAATGTGGAACCTTACTCCAATCCCTCACCAACTCCAAATCCTTAACCCAAGCCCTACAACTCCACGCTCACGTCACCACCGGCGGCACCCTCCGCCGCAACACCTACCTCGCCACCAAGCTCGCCGCATGCTACGCCGTCTGCGGCCACATGCCCTATGCCCAACACATCTTTGACCAAATCGTCCTCAAGAACTCGTTTCTCTGGAACTCCATGATCAGGGGCTACGCCTGCAACAACTCTCCCTCGAGGGCCCTTTTTCTATACCTCAAAATGCTGCATTTTGGACAAAAGCCTGATAACTTCACCTACCCTTTTGTCCTTAAGGCATGTGGGGACCTTCTGCTTCGCGAAATGGGTAGAAAGGTTCATGCTTTGGTGGTGGTTGGTGGGTTGGAGGAGGATGTTTATGTAGGCAACTCGATACTTTCGATGTACTTTAAGTTTGGTGACGTGGAAGCTGCGCGGGTTGTGTTTGATAGAATGCTTGTGAGGGACTTGACTTCTTGGAACACCATGATGTCGGGGTTTGTGAAGAATGGGGAGGCAAGGGGTGCTTTTGAGGTTTTTGGGGACATGAGAAGGGATGGTTTTGTGGGAGATAGGACCACCTTGCTTGCTCTTCTCTCTGCTTGTGGGGATGTTATGGATTTGAAGGTGGGGAAAGAGATTCATGGTTATGTTGTTAGGAATGGTGAGAGTGGGAGAGTCTGTAATGGGTTTCTGATGAATTCAATTATTGACATGTACTGCAATTGTGAGTCTGTGTCTTGTGCAAGGAAGTTGTTTGAAGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCTTTGATTTCGGGGTATGAGAAGTGCGGGGATGCTTTTCAAGCTCTTGAGCTTTTCGGTCGGATGGTTGTAGTAGGTGCAGTGCCTGATGAGGTGACTGTTATTTCTGTGCTTGCGGCTTGTAATCAAATCTCGGCATTGCGGTTGGGCGCGACTGTGCAGTCATATGTTGTTAAGAGGGGTTATGTTGTGAATGTTGTTGTGGGAACGGCACTTATTGGCATGTATGCTAACTGTGGAAGTTTGGTTTGTGCTTGTCGTGTGTTTGATGAGATGCCTGAGAAAAATTTGCCTGCTTGTACGGTTATGGTTACTGGATTTGGAATTCATGGGAGGGGGAGAGAGGCCATCTCCATTTTTTATGAAATGCTAGGTAAAGGTGTGACACCAGATGAGGGCATTTTCACTGCAGTTTTATCGGCTTGTAGTCATTCTGGATTAGTGGACGAGGGTAAAGAGATTTTCTACAAAATGACTAGAGACTATAGTGTGGAGCCTAGACCAACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACTTAGATGAAGCTTATGCAGTTATAGAGAATATGAAATTGAAACCTAATGAGGATGTGTGGACTGCTCTTCTTTCTGCATGCAGATTACATCGGAATGTCAAGTTAGCCGTGATCTCGGCGCAGAAGCTTTTTGAATTGAATCCAGATGGAGTGAGTGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACGGTGGGAAGATGTTGAAAACGTGAGGGCATTGGTGGCAAAAAGAAGATTGAGGAAACCACCTAGTTACAGTTTTGTTGAGCTAAATAAGATGGTTCATCAATTTTTTGTTGGGGATACTTCCCATGAACAGTCGGATGATATTTATGCCAAATTGAAAGACTTGAATGAGCAGCTGAAGAAAGCTGGATACAAACCTGACACCAGTTTAGTTCTCTACGATGTTGAGGAAGAAATAAAGGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAATACTGGTCCGGGGACCACTATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACGGTAATAAAAATGATTTCTAAGCTCACAAATCGGGAGATTATTATGCGAGATATTTGTAGGTTTCACCATTTTAGAGATGGCTTATGCTCATGTGGTGGATATTGGTGA
Predicted protein sequences of Glyma.12g102800
>Glyma.12g102800.1.p sequence-type=predicted peptide transcript=Glyma.12g102800.1 locus=Glyma.12g102800 ID=Glyma.12g102800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLLKTTATLIPKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo