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Report for Sequence Feature Glyma.12g089100

Feature Type:gene_model
Chromosome:Gm12
Start:7324648
stop:7327789
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g089100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04030.3AT Homeodomain-like superfamily protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA
PWY-2541SoyCyc9 plant sterol biosynthesis Plant Metabolic Network ISS
GN7V-67795SoyCyc9-rxn obtusifoliol-14α-demethylase Plant Metabolic Network ISS

Proteins Associated with Glyma.12g089100
LocusGene SymbolProtein Name
PHR20 MYB-CC domain-containing transcription factor PHR20

Expression Patterns of Glyma.12g089100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g089100
ParalogEvidenceComments
Glyma.11g183400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g089100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g09490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g089100
>Glyma.12g089100.2 sequence-type=transcript locus=Glyma.12g089100 ID=Glyma.12g089100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCCCTCCAGCTCTCATATATAACTACCTGTCTAAGCAGGCTTTGCAATGAAGAGAAATGTGCAGTGGAGAAACAAGACAAAGCACCACAAGTTAACATAGGTTCACTTATATATTACTATCAAGTCTTATTATTAATACTTGTAAATAGAGCATTATCAGGTTTCACCTTTCATTGGTAGCAAAGTGATCATTCAGAGAATAGAAGCCTGATCAGGTAAAGGCGCAATCATCAGGTTGAATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATTTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGAAAAAAGAAAGGACAACGGAAGTACACAAAGCAAGGCAACTCCAATGGCAGGAACAATGTATTTAATGTAAACAATGTATGTATCAGCTGCTGTTTCTTTCAGCTCATGGTGGTCACTAGCCAAATATCAGTTACTTTTAGTAGAATGCAAAATTGCAACTAACAAATTTGTAAGCAGTGATTATAGTGGAtagagtatcg
Coding sequences of Glyma.12g089100
>Glyma.12g089100.1 sequence-type=CDS polypeptide=Glyma.12g089100.1.p locus=Glyma.12g089100 ID=Glyma.12g089100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATTTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA

>Glyma.12g089100.2 sequence-type=CDS polypeptide=Glyma.12g089100.2.p locus=Glyma.12g089100 ID=Glyma.12g089100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATTTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA
Predicted protein sequences of Glyma.12g089100
>Glyma.12g089100.1.p sequence-type=predicted peptide transcript=Glyma.12g089100.1 locus=Glyma.12g089100 ID=Glyma.12g089100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGFSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIGLEGETENGSTIRTESVKPVADKVSQDYGLPSNYFAASKLDLTTEDNKDTKTSCKQLDLNGFSWN*

>Glyma.12g089100.2.p sequence-type=predicted peptide transcript=Glyma.12g089100.2 locus=Glyma.12g089100 ID=Glyma.12g089100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGFSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIGLEGETENGSTIRTESVKPVADKVSQDYGLPSNYFAASKLDLTTEDNKDTKTSCKQLDLNGFSWN*






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