Glyma.12g089000

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.12g089000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.12g089000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.12g089000

Feature Type:	gene_model
Chromosome:	Gm12
Start:	7291745
stop:	7296013
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g089000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08350.2	AT	Endomembrane protein 70 protein family	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
KOG1277	KOG	Endosomal membrane proteins, EMP70	JGI	N/A	IEA
PTHR10766	Panther	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	JGI	N/A	IEA
PTHR10766:SF14	Panther	TRANSMEMBRANE 9 SUPERFAMILY MEMBER 1	JGI	N/A	IEA
PF02990	PFAM	Endomembrane protein 70	JGI	N/A	IEA

Expression Patterns of Glyma.12g089000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g089000 not represented in the dataset	Glyma.12g089000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g089000

Paralog	Evidence	Comments
Glyma.11g183500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g089000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g09460	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g089000

Limit To All Plant Sequences

>Glyma.12g089000.2 sequence-type=transcript locus=Glyma.12g089000 ID=Glyma.12g089000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGGTGGCTGTAATGTAAGCATTTGACTCTGCGAGATCGCTGCATCTGGCTTCACTACCTGCATCTATGGCTAAACCCCACCATCTCTttctccttcttcttcttctctgcgccactcttgagttttcttcatcttcACCCTCCGATCACCTCTACAATGTTGGAGAACTTGTCCCATTGTTTGTCAACAAAGTGGGACCCTTCAACAACCCCAGTGAGACATATGAGTACTATGATTTGCCTTTCTGCACCCCAGACCCAATTGTCAGAAAGAAAGAGTCCCTTGGGGAAGTTCTCAATGGTGACCGTTTGAGCAATGCTTTGTATGAGTTTAAGTTCCGGGTGGACAAGATTGATGAGACCTTGTGCCAAAAGAATCTTACAATTGATCAAATTGCAACCTTTAAACGAGCTATAAACCGCGACTTTTACTTCCAGTTTTATCTGGACGATCTTCCACTATGGGGGTTCATTGGTAAACTTGAAGAGGATGGGTGGACACCTGGTGGAGGAGGACCTAACTATTACCTTTTTACACATGTTCAATTTGATGTTCTTTACAATGGGAACCGGATCATACAAGTCAATGCATTTGGTGATCCAAATCGCGCTGCAGATATTACTAAAGATGTTGGTGTTGATGTTAAGTTCACTTATTCTGTTATCTGGAATGCCACTAAAGTACGTTTTGAGAACAGGATGGACAGATACTTGAGAGCTTCGTTGATGCCTGTCCACCAGCAAGTTCATTGGTTCTCGTTTGTTAACTCAATTGTCATCATTTTGCTTTTGATTGGTTTGCTTGCCCTGCTTTATATGCGGCATCTGAGGAGTGATTTGAAAAAGTATTCTAATGCAAATGAAGAAGATAATGAGGTTGGTTGGAAGTCCCTCCAACATGGCGATGTATTCAGACCTCCTCCAAACTCATCCTTACTTTTTGCTGTTGTGGGAACTGGTACCCAATTGCTAATCTTGCTTTGTGTCTTGCTGTTTCTAGCACTTATTGGCACCCTCTATCCCTACAATCGTGGAGGACTGTTAAATTGGCTTGTCTTGCTGTATGCTCTTTCATCTGTTTTTGCTGGGTACACTGCAGCATCCTTCCATGGCCTGTTTGCTGAGAATGGATGGGTAATTCTTTACATAATTCCACAAGAAAGACAAAAATGTTACACTTTTAATGTTATTTTTAACTACCTATAAATATATGTGATTTGGCTATAATTCCAGGAAAGGAGTGCTAGTCTAGCAGCAATTCTTTACACTGGACCAGTGTTTGTTGTAGCCTCTATCCTCAACATTGTCGCAATATCTTACAGGGCTACAATTGGACTCCCATTCGGCTCTATTATTGTGATTCTTGTTTTATTAACATTTCTCGCCATCCCATTGCTTGCATTTGGTGGAGTGATTGGATACCGTTTTAGATCTAAATTTCAAAGCTCCTCTGCCACAAAGAGACATCCGAGAGATATTCAACAGCTTGCTTGGTACAGGAGAACACCATTTCTAATGTTTATTGGGGGTCTTGTGCCTTTTAGTGCAATAGTCCTGCAACTACACCAGGCATATGCTAATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTCTACTTCTATGTGAGATCAAATATGAGTGGATTCTTGCAGCTATCCTTCTTTATTGGCTATAATGCATGCCTATGCTATGCTTTCTTCCTAATATTTGGTGCCATTAGTTTCCGAGTTTCATTGCTATTTGTTCGCCATATATACCACGATGTTAAAAGAGAGTGAGTTACCTATCTCAGAAGCAAAAGCAATATTGGTTATAATGCAAGGGTATCCCTTCCTTGAGTTATGGACTACCCTTTGGAAAGTCTAGTGTACACAGTATGATGTAACGGTATCCCTTGAATTTTTTTAGTTAAAGGACATTTGTGCAGACAATGTATCCTTTATTTTACTTTTCTCAACTCCATGACTGCACATTTTGGAAGAGGCTTCCTGTGGTGGCACGTTTTACCCTGGGAAAAGAGATGAGTGGAATGACATTTCTAAGAAGGATTAAGTGTCTATTTTTGTTTTGAAGTTTATTagagttgattttaaatccttaaatataattaaaatgtgccaaaaataattccagccaccaattttacattaaaatgtgtgtataatgtgaataattgatttctaatgtaactcaaacaggTCCCAAGTCCCAAGTCCACAGGTTGTTTGAGTAACTTTTCTTTTTTGGGTGTTACTTTTCTACTGAAGTTTGTCAATTGTAATGATCTGTCCAAAAAAAAGAGTTCATTGTAATAAGGTTTAATATTTTCTCATTTTT

Coding sequences of Glyma.12g089000

Limit To All Plant Sequences

>Glyma.12g089000.1 sequence-type=CDS polypeptide=Glyma.12g089000.1.p locus=Glyma.12g089000 ID=Glyma.12g089000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAACCCCACCATCTCTTTCTCCTTCTTCTTCTTCTCTGCGCCACTCTTGAGTTTTCTTCATCTTCACCCTCCGATCACCTCTACAATGTTGGAGAACTTGTCCCATTGTTTGTCAACAAAGTGGGACCCTTCAACAACCCCAGTGAGACATATGAGTACTATGATTTGCCTTTCTGCACCCCAGACCCAATTGTCAGAAAGAAAGAGTCCCTTGGGGAAGTTCTCAATGGTGACCGTTTGAGCAATGCTTTGTATGAGTTTAAGTTCCGGGTGGACAAGATTGATGAGACCTTGTGCCAAAAGAATCTTACAATTGATCAAATTGCAACCTTTAAACGAGCTATAAACCGCGACTTTTACTTCCAGTTTTATCTGGACGATCTTCCACTATGGGGGTTCATTGGTAAACTTGAAGAGGATGGGTGGACACCTGGTGGAGGAGGACCTAACTATTACCTTTTTACACATGTTCAATTTGATGTTCTTTACAATGGGAACCGGATCATACAAGTCAATGCATTTGGTGATCCAAATCGCGCTGCAGATATTACTAAAGATGTTGGTGTTGATGTTAAGTTCACTTATTCTGTTATCTGGAATGCCACTAAAGTACGTTTTGAGAACAGGATGGACAGATACTTGAGAGCTTCGTTGATGCCTGTCCACCAGCAAGTTCATTGGTTCTCGTTTGTTAACTCAATTGTCATCATTTTGCTTTTGATTGGTTTGCTTGCCCTGCTTTATATGCGGCATCTGAGGAGTGATTTGAAAAAGTATTCTAATGCAAATGAAGAAGATAATGAGGTTGGTTGGAAGTCCCTCCAACATGGCGATGTATTCAGACCTCCTCCAAACTCATCCTTACTTTTTGCTGTTGTGGGAACTGGTACCCAATTGCTAATCTTGCTTTGTGTCTTGCTGTTTCTAGCACTTATTGGCACCCTCTATCCCTACAATCGTGGAGGACTGTTAAATTGGCTTGTCTTGCTGTATGCTCTTTCATCTGTTTTTGCTGGGTACACTGCAGCATCCTTCCATGGCCTGTTTGCTGAGAATGGATGGGAAAGGAGTGCTAGTCTAGCAGCAATTCTTTACACTGGACCAGTGTTTGTTGTAGCCTCTATCCTCAACATTGTCGCAATATCTTACAGGGCTACAATTGGACTCCCATTCGGCTCTATTATTGTGATTCTTGTTTTATTAACATTTCTCGCCATCCCATTGCTTGCATTTGGTGGAGTGATTGGATACCGTTTTAGATCTAAATTTCAAAGCTCCTCTGCCACAAAGAGACATCCGAGAGATATTCAACAGCTTGCTTGGTACAGGAGAACACCATTTCTAATGTTTATTGGGGGTCTTGTGCCTTTTAGTGCAATAGTCCTGCAACTACACCAGGCATATGCTAGTATGTGGGGCTACAAAATATACACTCTTCCTAGCATTTTATTTGCCACATTCATTCCTGTCATTTTGATCATTGCACTTGTCAGTATTGGCTTGACATACATTCAACTATCTGCGGAAGACCATGAATGGTGGTGGAGATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTCTACTTCTATGTGAGATCAAATATGAGTGGATTCTTGCAGCTATCCTTCTTTATTGGCTATAATGCATGCCTATGCTATGCTTTCTTCCTAATATTTGGTGCCATTAGTTTCCGAGTTTCATTGCTATTTGTTCGCCATATATACCACGATGTTAAAAGAGAGTGA

>Glyma.12g089000.2 sequence-type=CDS polypeptide=Glyma.12g089000.2.p locus=Glyma.12g089000 ID=Glyma.12g089000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAACCCCACCATCTCTTTCTCCTTCTTCTTCTTCTCTGCGCCACTCTTGAGTTTTCTTCATCTTCACCCTCCGATCACCTCTACAATGTTGGAGAACTTGTCCCATTGTTTGTCAACAAAGTGGGACCCTTCAACAACCCCAGTGAGACATATGAGTACTATGATTTGCCTTTCTGCACCCCAGACCCAATTGTCAGAAAGAAAGAGTCCCTTGGGGAAGTTCTCAATGGTGACCGTTTGAGCAATGCTTTGTATGAGTTTAAGTTCCGGGTGGACAAGATTGATGAGACCTTGTGCCAAAAGAATCTTACAATTGATCAAATTGCAACCTTTAAACGAGCTATAAACCGCGACTTTTACTTCCAGTTTTATCTGGACGATCTTCCACTATGGGGGTTCATTGGTAAACTTGAAGAGGATGGGTGGACACCTGGTGGAGGAGGACCTAACTATTACCTTTTTACACATGTTCAATTTGATGTTCTTTACAATGGGAACCGGATCATACAAGTCAATGCATTTGGTGATCCAAATCGCGCTGCAGATATTACTAAAGATGTTGGTGTTGATGTTAAGTTCACTTATTCTGTTATCTGGAATGCCACTAAAGTACGTTTTGAGAACAGGATGGACAGATACTTGAGAGCTTCGTTGATGCCTGTCCACCAGCAAGTTCATTGGTTCTCGTTTGTTAACTCAATTGTCATCATTTTGCTTTTGATTGGTTTGCTTGCCCTGCTTTATATGCGGCATCTGAGGAGTGATTTGAAAAAGTATTCTAATGCAAATGAAGAAGATAATGAGGTTGGTTGGAAGTCCCTCCAACATGGCGATGTATTCAGACCTCCTCCAAACTCATCCTTACTTTTTGCTGTTGTGGGAACTGGTACCCAATTGCTAATCTTGCTTTGTGTCTTGCTGTTTCTAGCACTTATTGGCACCCTCTATCCCTACAATCGTGGAGGACTGTTAAATTGGCTTGTCTTGCTGTATGCTCTTTCATCTGTTTTTGCTGGGTACACTGCAGCATCCTTCCATGGCCTGTTTGCTGAGAATGGATGGGTAATTCTTTACATAATTCCACAAGAAAGACAAAAATGTTACACTTTTAATGTTATTTTTAACTACCTATAA

Predicted protein sequences of Glyma.12g089000

Limit To All Plant Sequences

>Glyma.12g089000.1.p sequence-type=predicted peptide transcript=Glyma.12g089000.1 locus=Glyma.12g089000 ID=Glyma.12g089000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKPHHLFLLLLLLCATLEFSSSSPSDHLYNVGELVPLFVNKVGPFNNPSETYEYYDLPFCTPDPIVRKKESLGEVLNGDRLSNALYEFKFRVDKIDETLCQKNLTIDQIATFKRAINRDFYFQFYLDDLPLWGFIGKLEEDGWTPGGGGPNYYLFTHVQFDVLYNGNRIIQVNAFGDPNRAADITKDVGVDVKFTYSVIWNATKVRFENRMDRYLRASLMPVHQQVHWFSFVNSIVIILLLIGLLALLYMRHLRSDLKKYSNANEEDNEVGWKSLQHGDVFRPPPNSSLLFAVVGTGTQLLILLCVLLFLALIGTLYPYNRGGLLNWLVLLYALSSVFAGYTAASFHGLFAENGWERSASLAAILYTGPVFVVASILNIVAISYRATIGLPFGSIIVILVLLTFLAIPLLAFGGVIGYRFRSKFQSSSATKRHPRDIQQLAWYRRTPFLMFIGGLVPFSAIVLQLHQAYASMWGYKIYTLPSILFATFIPVILIIALVSIGLTYIQLSAEDHEWWWRSVLCGGSTAIFMFGYCVYFYVRSNMSGFLQLSFFIGYNACLCYAFFLIFGAISFRVSLLFVRHIYHDVKRE*

>Glyma.12g089000.2.p sequence-type=predicted peptide transcript=Glyma.12g089000.2 locus=Glyma.12g089000 ID=Glyma.12g089000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKPHHLFLLLLLLCATLEFSSSSPSDHLYNVGELVPLFVNKVGPFNNPSETYEYYDLPFCTPDPIVRKKESLGEVLNGDRLSNALYEFKFRVDKIDETLCQKNLTIDQIATFKRAINRDFYFQFYLDDLPLWGFIGKLEEDGWTPGGGGPNYYLFTHVQFDVLYNGNRIIQVNAFGDPNRAADITKDVGVDVKFTYSVIWNATKVRFENRMDRYLRASLMPVHQQVHWFSFVNSIVIILLLIGLLALLYMRHLRSDLKKYSNANEEDNEVGWKSLQHGDVFRPPPNSSLLFAVVGTGTQLLILLCVLLFLALIGTLYPYNRGGLLNWLVLLYALSSVFAGYTAASFHGLFAENGWVILYIIPQERQKCYTFNVIFNYL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain