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Report for Sequence Feature Glyma.12g087600

Feature Type:gene_model
Chromosome:Gm12
Start:7158977
stop:7163526
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g087600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04160.1AT Subtilisin-like serine endopeptidase family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0043086GO-bp negative regulation of catalytic activity JGI N/AIEA
GO:0004252GO-mf serine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004252GO-mf serine-type endopeptidase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0042802GO-mf identical protein binding JGI N/AIEA
PTHR10795Panther PROPROTEIN CONVERTASE SUBTILISIN/KEXIN JGI N/AIEA
PTHR10795:SF17Panther JGI N/AIEA
PF00082PFAM Subtilase family JGI N/AIEA
PF02225PFAM PA domain JGI N/AIEA
PF05922PFAM Peptidase inhibitor I9 JGI N/AIEA

Expression Patterns of Glyma.12g087600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g087600
ParalogEvidenceComments
Glyma.11g184800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g087600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g09290 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g087600
>Glyma.12g087600.1 sequence-type=CDS polypeptide=Glyma.12g087600.1.p locus=Glyma.12g087600 ID=Glyma.12g087600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGTTTGCCAAAATTTTGAGCTCTTTCACCCTTCTGTTCATTGGGTATACTTTGGTGAATGGATCCACACCAAAGCATTATATAGTTTACATGGGAGATCATTCACACCCTAATTCAGAATCTGTAATCAGAGCAAACCATGAGATACTAGCTTCAGTTACTGGAAGCCTCAGTGAAGCAAAAGCAGCAGCACTCCACCATTACACTAAAAGCTTCCAAGGTTTCTCAGCCATGATTACACCAGAGCAAGCTAGTCAACTTGCAGAATATGAATCAGTATTGTCCGTATTTGAGAGCAAAATGAATAAACTTCACACAACACATTCTTGGGATTTTCTTGGATTAGAAACTATCAGTAAGAACAATCCTAAAGCACTGGACACCACATCCGATGTCATTGTTGGTGTTATTGACTCTGGCATCTGGCCGGAATCGGAAAGCTTCACTGATTATGGACTAGGTCCTGTGCCCAAAAAATTCAAGGGAGAGTGTGTTACTGGTGAAAAATTTACACTGGCCAATTGCAACAAGAAAATTATTGGTGCTCGGTTCTATTCAAAAGGGTTTGAAGCAGAAGTTGGTCCTCTAGAGGGCGTTAACAAGATTTTTTTCCGGTCAGCCCGGGATGGTGATGGACATGGAACACACACAGCTTCCACAATAGCAGGCTCCATTGTTGCTAATGCCAGCTTATTAGGTATTGCCAAAGGAACTGCTAGAGGTGGTGCCCCAAGTGCGAGACTTGCAATCTACAAGGCCTGTTGGTTTGATTTCTGTGGTGATGCTGATATTCTTTCTGCCATGGATGATGCCATCCATGATGGAGTTGACATACTGTCTCTTTCCCTTGGCCCTGATCCTCCGGAGCCAATTTACTTCGAGAATGCAATCAGTGTAGGAGCATTCCATGCATTCCAAAAGGGTGTTCTTGTTTCTGCTTCAGCTGGAAACTCTGTTTTTCCACGTACTGCATGCAATGTTGCTCCTTGGATCCTCACTGTTGCTGCTAGCACAATTGACAGGGAATTCAGTTCCAATATCTTACTTGGTAACTCAAAGGTCTTAAAGAAAGGTTTGCATCTTCAGGGTTCTTCTCTGAATCCAATAAGAATGGATCATTCGTATGGTTTGATATATGGAAGTGCTGCTGCAGCTGTCGGAGTTTCAGCAACAATTGCAGGCTTCTGCAAGAACAATACTCTAGATCCTACATTAATCAAGGGTAAAATTGTAATCTGCACAATTGAGAAATTCAGTGATGACAGACGAGCGAAGGCCATAGCAATAAGGCAAGGAGGAGGTGTTGGAATGATACTTATTGATCATAATGCCAAAGATATTGGTTTTCAATTTGTCATCCCAAGCACTCTCATTGGTCAGGATGCTGTAGAAGAGCTTCAAGCATATATAAAGACAGATAAAAATCCCACTGCTAGAATCTACCCAACAATAACTGTAGTTGGTACCAAACCTGCTCCGGAAATGGCAGCTTTTTCTTCCATTGGACCGAACATAATAACACCAGACATTATTAAGCCCGACATCACAGCACCTGGAGTGAATATTTTGGCAGCATGGTCTCCAGTGGCAACTGAAGCCACAGTCGAACAACGATCCATCGACTATAACATCATTTCAGGAACATCAATGTCTTGTCCACACATAACTGCAGTTGCAGCAATTATAAAATCTCACCACCCACACTGGGGTCCTGCAGCCATAATGTCTTCAATAATGACAACAGCAACAGTTATGGATAACACACGCCGCATCATAGGAAGAGATCCAAATGGAACTCAAACCACACCATTTGACTATGGATCTGGACATGTTAACCCAGTTGCATCACTTAATCCTGGATTAGTATATGAATTTAATTCCAAAGATGTTCTCAATTTTCTATGCAGCAACGGGGCAAGCCCAGCACAGCTTAAGAACCTAACTGGGGCTCTTACTCAATGTCAGAAACCTCTTACAGCTTCCTCCAACTTCAATTATCCTTCAATTGGTGTGTCCAACTTGAATGGAAGTTCATCAGTGTATCGTACAGTTACTTATTATGGTCAAGGGCCAACGGTATATCATGCAAGTGTTGAAAATCCATCTGGTGTGAATGTTAAAGTTACACCTGCAGAATTGAAGTTCCGGAAAACTGGGGAAAAAATAACTTTCAGGATTGATTTCTTCCCTTTCAAGAATAGCAATGGAAATTTTGTGTTTGGTGCTTTGATATGGAACAATGGCATTCAAAGGGTTAGGAGTCCTATTGGTCTCAACGTAGTATCTACATAA
Predicted protein sequences of Glyma.12g087600
>Glyma.12g087600.1.p sequence-type=predicted peptide transcript=Glyma.12g087600.1 locus=Glyma.12g087600 ID=Glyma.12g087600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRFAKILSSFTLLFIGYTLVNGSTPKHYIVYMGDHSHPNSESVIRANHEILASVTGSLSEAKAAALHHYTKSFQGFSAMITPEQASQLAEYESVLSVFESKMNKLHTTHSWDFLGLETISKNNPKALDTTSDVIVGVIDSGIWPESESFTDYGLGPVPKKFKGECVTGEKFTLANCNKKIIGARFYSKGFEAEVGPLEGVNKIFFRSARDGDGHGTHTASTIAGSIVANASLLGIAKGTARGGAPSARLAIYKACWFDFCGDADILSAMDDAIHDGVDILSLSLGPDPPEPIYFENAISVGAFHAFQKGVLVSASAGNSVFPRTACNVAPWILTVAASTIDREFSSNILLGNSKVLKKGLHLQGSSLNPIRMDHSYGLIYGSAAAAVGVSATIAGFCKNNTLDPTLIKGKIVICTIEKFSDDRRAKAIAIRQGGGVGMILIDHNAKDIGFQFVIPSTLIGQDAVEELQAYIKTDKNPTARIYPTITVVGTKPAPEMAAFSSIGPNIITPDIIKPDITAPGVNILAAWSPVATEATVEQRSIDYNIISGTSMSCPHITAVAAIIKSHHPHWGPAAIMSSIMTTATVMDNTRRIIGRDPNGTQTTPFDYGSGHVNPVASLNPGLVYEFNSKDVLNFLCSNGASPAQLKNLTGALTQCQKPLTASSNFNYPSIGVSNLNGSSSVYRTVTYYGQGPTVYHASVENPSGVNVKVTPAELKFRKTGEKITFRIDFFPFKNSNGNFVFGALIWNNGIQRVRSPIGLNVVST*






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