SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.12g087000

Feature Type:gene_model
Chromosome:Gm12
Start:7013100
stop:7036231
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.12g087000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08260.1AT ABO4,EMB142,EMB2284,EMB529,ESD7,POL2A,TIL1 JGI N/AIEA
2.7.7.7EC DNA-directed DNA polymerase JGI N/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0008408GO-mf 3'-5' exonuclease activity JGI N/AIEA
K02324KEGG DNA repair and recombination proteins JGI N/AIEA
PTHR10670PantherFam DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A JGI N/AIEA
PF00136Pfam DNA polymerase family B JGI N/AIEA
PF03104Pfam DNA polymerase family B, exonuclease domain JGI N/AIEA
PF08490Pfam Domain of unknown function (DUF1744) JGI N/AIEA

Gene model name correspondences to Glyma.12g087000 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g09220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g087000
>Glyma.12g087000.1 sequence-type=CDS polypeptide=Glyma.12g087000.1.p locus=Glyma.12g087000 id=Glyma.12g087000.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAGCGGCGATGGCCGGAGACGTGACCGGAGAGACAACAGAGCATCCAAGAAGCGGAAGCTGAACCGCACTCCCGAGGAAGAGCTCGAGGCGAAATTAGGGTTCGATCTCTTCTCAGAAGGTGAAAAGCGTCTAGGATGGTTACTCACTTTTGCATCCTCTTCTGTTGACGATGAAGACAGTTACAAAGTGTACAGTTGCGTTGATCTTTACTTTGTTGCACAGGATGGCTCTTCATTCAAGACAAAATTCAGATTTCGGCCCTATTTCTATGTAGCTACAAAGGATAAAATGGAGATTGATGTTGAAGCATACCTGAAAAGACGTTATGAAGGTCAGATTGCAGATGTTGAAATTATAGAAAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAGAGACCTGATGCCTACTGTTGAAAGAAATAAGGCCAAGTCTGATGCTGCAGAAGCTTTTTTGTCCGTGTCAACAGAAAGAAGAGAACATAGACCTCAAGATTTTCTAGATTGCATAACCGATGTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAGTAATAATGGGGTTACACTTGAGAAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGCGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGATTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGCTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACGTATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTCAAATGCGATATGAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTGAAGGCAGTTACAAAAGCAAAGTTGGGATATGATCCATTGGAGGTGAATCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCACAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTGTGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCTAATGTTATATGTCCTAACAAACATCAATCTGACCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCCATAACAGTGGAGGGTAAGATGGATTTGGAATTTGTTTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGCACCAATACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCCATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACGGAGGAAGTTTGCACTGCATGTGATTTTAATCGTCCCGGAAAGACTTGCCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCTAAGAAAAGTGACTATTATGCTTTAAAGACACAAATTGAATCAGAGTTTGTTGATGATTCTGAGAAGAACAACAAAGCCTTGACCCACTATTCTGAGAAGTCATCAAAATCTTTTCTTGACCTTCCCAAGGCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAACTTCGAGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGATACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAGTTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATACGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCCCGCTTACTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACGAAAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACACAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCACAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTCGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACTTTAGAGGAATGCTATTCAGCTGTTGCTTCAGTGGCAAATGGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTCAGCAAAAATCTTGTGCTGTTACCACTGCTAGACGTCTGGCTGACTTTCTTGGCGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGCACACCAGTAAGTGAGCGTGCTGTTCCTGTAGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAATTAGTTGATGCCTTTAAATCAATGAATAGGAATGAACACTCAAAAAGGCATGATGACTCAACTCGTGTCCCTCTTGTCATGGATGGTGATATTGTTAATGAGTTGGAGGACTTTGGAAATAAGGACAGGAGTTCTACATGCAGACCTAGACCAATTATACGGCATTATGAAGCTAACAATGAACAACATTCAAGGAAGGTCAATGATCAAGAAGATGTGGAGCAGCAGCATAATAAACCATTACAACAAAATGTTTACAGAAGTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGCGAACGTGGAAGGATATTCTGGAAAGGAGAAAGAAGCAAAGATTGGAGAATTCAAAGAAATCTGACCGTGTTAGTAGTGTTCTTGAACAAATGAATGGTAAGGGGAATCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAGCGTCACTGGCAGATAATACAACTAGTCCCCAGTTCACTGATAGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCATGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCAGCAATTACTGAAGGATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACTTGTATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGCAAGCCAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAGTATATGAAACTAAGGTGCCACTGGAATTTAATGCAATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAGACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTAAGTGAATTGCACATGAAGACCACAGCAGAATGTGCTTATCTTGAACAATCTATATCTTTCTTTTATTTTTACCATAGCATCTCTGAGGGACGGGCTATATACATTGGATATTTTCCTGCATCAAAAACAATGACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATCCCCGGTTTTTCTTGAAAGACATTTTCATGATGCTTGCCAGTCTTTGTCTATTGAGCCACCTCCGAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAGCAGTGATGCAAAGAGCAATAAATGGCCACAGTCATGGGAGGGAAAATCACATGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGCATCCGAGCTCTGGATAATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAACTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGCTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGCTGGGGAACTTTGAACTTGACTGGCTTATATTTATTGCGGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTACTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGAATTAACAGTGAACAGAACTGTTTTGTCGACGAGGTCCAACAACCTGCTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGCTAAAGATACACCACCTGGCTGTAAATGCTCTTCTCAAATACAACCTAGTTAATGAAATGGAAGGAGGCACTCTATTAAGATTTGGTCATGAACTTGATTCTGGAGCATTTTCCACAAATGATCAAAATGGTTTTGACGAGTCTACCTCATGTGTACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCTGATGCAGTTACATCCGGAAATGTTTATGCTGATTCAATTTTGCAACATCTGTATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCTGCTCTCCACCAGTTACTCCACAAGGTCATGCAGAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTTTCAAAGATTATTATAGACACTGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAATCAAGAGATCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAACAAAATCTGATGAAGCTGTAAATAATGAATCTCAAGTAGACATTATATCAAGCTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTTTGTTTTCATCGTTTCTCAGTTCATGTATATTCCCTGGAATTATGCAAAAAAACAAGCACAAATCAGGGCCTCATTGCAGAATGGTGACTCCTGTACACCATCAATTAACATTGGAGCCGCAGAGGCTTTTGAATCAGAAATAACGGAATTTACCAAAGAGCAGATCGGCTCGTACTTCACACACAAACTGCTAGGAATTGTTCACGATATTGGTCTTCATATGAAGGGTATGAACAGATTAGAAAACAACCAGAGTACATCGGGCCTTCCTCCACTTACGGGTGATGTCCATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAAAATTTGCTCAAATATGTTGATGTTAAGGAGTTTGCTCCTGAAGCTAAGTTTCATGGTCCTTGTCATTCCTTCATCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGATTTGTGCCGTGATTCGGCTTTGTTAACTGAGGAGTGGCGTTGTGCGGTTCCACAGTGTGCCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAAACTGTAAGACAAAGAGAACGGCTATACCACCTGCAAGATCTGGTGTGTACCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGCAAGTGAATTTCGTGAAAAAATGCAAATTTTCTTGAACATAGCTTCTCGTCAGAAATTCCAACTTCTCCAAGAATGTACCTCTTGGATTTTAGAACTTAGATAG
Predicted protein sequences of Glyma.12g087000
>Glyma.12g087000.1.p sequence-type=predicted peptide transcript=Glyma.12g087000.1 locus=Glyma.12g087000 id=Glyma.12g087000.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSGDGRRRDRRDNRASKKRKLNRTPEEELEAKLGFDLFSEGEKRLGWLLTFASSSVDDEDSYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKAKSDAAEAFLSVSTERREHRPQDFLDCITDVREYDVPYHVRFAIDNDIRCGQWYDVGVSSNNGVTLEKKTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNAQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELGFKCDMNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSEKNNKALTHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKRHDDSTRVPLVMDGDIVNELEDFGNKDRSSTCRPRPIIRHYEANNEQHSRKVNDQEDVEQQHNKPLQQNVYRSVDYQGWLQIKKRTWKDILERRKKQRLENSKKSDRVSSVLEQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQIIQLVPSSLIGQFFAWVVVDGSMHKIHVSVPRVFYLNSRSAITEGFMGKRVNKTLPHGRHSYNLYEVSINEIQYGEASQKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTAECAYLEQSISFFYFYHSISEGRAIYIGYFPASKTMTVVVVNPYQNKDLSPVFLERHFHDACQSLSIEPPPRNGINFKVDYVAHVKDAEAVMQRAINGHSHGRENHMPMVAVIECPNVQLVKLGIRALDNFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCAASVQWLNQRIALSRYAHVPLGNFELDWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGINSEQNCFVDEVQQPALTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLRFGHELDSGAFSTNDQNGFDESTSCVQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPTKSDEAVNNESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEITEFTKEQIGSYFTHKLLGIVHDIGLHMKGMNRLENNQSTSGLPPLTGDVHRGDASLEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFILSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCAQPYDREVMENALLQTVRQRERLYHLQDLVCTRCHQVKAAHLAEQCACAGSFRCKEDASEFREKMQIFLNIASRQKFQLLQECTSWILELR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo