Glyma.12g085800

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Report for Sequence Feature Glyma.12g085800

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6923724
stop:	6927382
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g085800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44860.1	AT	Ribosomal protein L24e family protein	JGI	N/A	IEA
GO:0000027	GO-bp	ribosomal large subunit assembly	EnsemblGenomes	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:1902626	GO-bp	assembly of large subunit precursor of preribosome	EnsemblGenomes	N/A	IEA
GO:0022625	GO-cc	cytosolic large ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	EnsemblGenomes	N/A	IEA
KOG1723	KOG	60s ribosomal protein L30 isolog	JGI	N/A	IEA
PTHR10792	Panther	60S RIBOSOMAL PROTEIN L24	JGI	N/A	IEA
PTHR10792:SF3	Panther		JGI	N/A	IEA
PF01246	PFAM	Ribosomal protein L24e	JGI	N/A	IEA

Expression Patterns of Glyma.12g085800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g085800 not represented in the dataset	Glyma.12g085800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g085800

Paralog	Evidence	Comments
Glyma.11g188900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g085800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g09090	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g085800

Limit To All Plant Sequences

>Glyma.12g085800.2 sequence-type=transcript locus=Glyma.12g085800 ID=Glyma.12g085800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGACCCATTGGCATCACGCAATCCCCTATTCATAGCATCCACCAAGAGGTGCAACAACTCATTGATTCTCACTGGCTCACGGCCTGCAACCCTCGAAACGTGAATAGCCGTGGCGGCCACCTATTTCTCTGTTTAACGTCTTCACTCATTCTCATTTTCGCCTCAAACTACTTCTTCCACCGATCACTGTTCAGCAGAGAAGTGTTGCCTTGGTCTCTTGAGGTGCAATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTTAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAAATGGAGGCAGCTAGGGAGTTGGAGCAGGGCATAAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTCTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCTCAACAACAATCAGAGGACAATCATCCCATGGAAGAGTGATGTCATGTCAATGCTGCACTTTCAACCCCAGTTTTGTGATTTTGTGCTTCATAGGTGGATTCGTTGTCCAAATTACAAGTTGGTTCATTGCTGATCCGACATGTGAATGATGCGATTTTGAAACAAAAGTTTTGGCCGTTGAAAATATGTTAGTGATATTGTTTTTGGACACAATAATAGTCCTGTGCGACAGTGAACTATTATATAAACCAAAGCAGAAAGACGTTGCCCAACAAGAAGTCGCCTTGGACTTATTCGAGTATTCAATCTGTTAATCTCAAGTCAAATGTTAAATTTGTAGGTAAGTAAAAGTTCTTTATACTAGGTACTTCACTAATTTGACTGATGAATGCCTATTTAGAACATAGAAGATGCTATTTTGACATCTTAGTCATATTTTTGATGGATTTGGTAATGTCATATCATTCTCAACATCTTTTTATTTTTTATTCCAATAGTA

Coding sequences of Glyma.12g085800

Limit To All Plant Sequences

>Glyma.12g085800.1 sequence-type=CDS polypeptide=Glyma.12g085800.1.p locus=Glyma.12g085800 ID=Glyma.12g085800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTTAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAAATGGAGGCAGCTAGGGAGTTGGAGCAGGGCATAAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTCTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCTCAACAACAATCAGAGGACAATCATCCCATGGAAGAGTGA

>Glyma.12g085800.2 sequence-type=CDS polypeptide=Glyma.12g085800.2.p locus=Glyma.12g085800 ID=Glyma.12g085800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTTAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAAATGGAGGCAGCTAGGGAGTTGGAGCAGGGCATAAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTCTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCTCAACAACAATCAGAGGACAATCATCCCATGGAAGAGTGA

Predicted protein sequences of Glyma.12g085800

Limit To All Plant Sequences

>Glyma.12g085800.1.p sequence-type=predicted peptide transcript=Glyma.12g085800.1 locus=Glyma.12g085800 ID=Glyma.12g085800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREEKHHKNRMKGKKQKLQMEAARELEQGISLVKAPSVLQKDPSLTLPKIKVGVSQQQSEDNHPMEE*

>Glyma.12g085800.2.p sequence-type=predicted peptide transcript=Glyma.12g085800.2 locus=Glyma.12g085800 ID=Glyma.12g085800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREEKHHKNRMKGKKQKLQMEAARELEQGISLVKAPSVLQKDPSLTLPKIKVGVSQQQSEDNHPMEE*

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