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Report for Sequence Feature Glyma.12g084700

Feature Type:gene_model
Chromosome:Gm12
Start:6839463
stop:6843048
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g084700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03740.1AT histone deacetylase 2C JGI N/AIEA
GO:0006325GO-bp chromatin organization EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0016569GO-bp covalent chromatin modification EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA

Proteins Associated with Glyma.12g084700
LocusGene SymbolProtein Name
HD2A histone deacetylase HDT1

Expression Patterns of Glyma.12g084700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g084700
ParalogEvidenceComments
Glyma.11g189500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g084700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g09000 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g084700
>Glyma.12g084700.1 sequence-type=CDS polypeptide=Glyma.12g084700.1.p locus=Glyma.12g084700 ID=Glyma.12g084700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTGTGGATTCATACATACACATTTCTCAGGTTGCGCTCGGAGAGGCGAAAAAGGACAAACCTAATGAACCTGTGGTTCTGTACTTGAAAGTTGGTGAACAGAAGATTGTTTTGGGAACCCTTTCTAGGGATGGCATCCCTCACCTATCATTGGATTTGGTTCTGGACTCCGATTCTGAGCTTTCCCACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTGATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATCTATTCCCAAGATTGGTGCACCAGCAAAAGCTGCTGATCCTAAGAAAGACGAGGATGATGATTCCGATGATGAATCGGATGATGATCTTGCTGGTGAAGATGAATCTGGAAGTTCCGATGAGATGGATGATGATAGCAATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGGGAAAACTCCCAACAGTACAAAAGGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA
Predicted protein sequences of Glyma.12g084700
>Glyma.12g084700.1.p sequence-type=predicted peptide transcript=Glyma.12g084700.1 locus=Glyma.12g084700 ID=Glyma.12g084700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAPMEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAEGAKVTKPSKSIPKIGAPAKAADPKKDEDDDSDDESDDDLAGEDESGSSDEMDDDSNSEEESDGDDEETPAKKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGGQ*






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