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Report for Sequence Feature Glyma.12g084600

Feature Type:gene_model
Chromosome:Gm12
Start:6827448
stop:6833505
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g084600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22740.1AT cellulose synthase-like A02 JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups JGI N/AIEA
PTHR10587Panther GLYCOSYL TRANSFERASE-RELATED JGI N/AIEA
PTHR10587:SF34Panther JGI N/AIEA
PF00535PFAM Glycosyl transferase family 2 JGI N/AIEA
GN7V-61932SoyCyc9-rxn glucomannan 4-β-mannosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g084600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g084600
ParalogEvidenceComments
Glyma.11g189600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g084600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g08990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g084600
>Glyma.12g084600.1 sequence-type=CDS polypeptide=Glyma.12g084600.1.p locus=Glyma.12g084600 ID=Glyma.12g084600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGAATCTCAGCCCAAGTTCTTCATCCCCGACTCGATCAATGGAGTGAATTTCGACGTGGCGGCGCAGATTAAGATGGTGTGGGAAGTGATCAAGGCGCCATTGATCGTGCCACTGCTGAACCTCGCAGTGTACATTTCCCTAGCGATGGCACTCATGCTCTTCATGGAGAGGGTGTACATGGGCATTGTCATCATCCTCGTTAAGCTCTTCTGGAAGAAGCCCCACCAGCGCTACAAGTTCGAGCCACTCCAAGACGACGAGGAACTCGGGAACTCTAATTACCCCGTCGTGCTTGTGCAGATTCCAATGTTCAATGAAAAAGAGGTGTACAAGGTGTCGATTGGAGCAGCTTGCAATCTTTCATGGCCTGTGGATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGCAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATAGTGTACCAAATCAGAGAAACAAGAGGAGGGTACAAAGCGGGTGCTCTAAAAGAAGGCCTAAAACGTAACTATGTGAAACACTGCGAGTACGTGGCAATTTTCGATGCAGATTTCAGGCCAGAGCCAGATTTTCTCAGACGTTCCATTCCTTTCTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTCGCAAAATCATCGCCCACATGGTCACCTTCTTCTTCTACTGTGTTGTGATTCCCCTTACAATCCTGGTCCCTGAGGTTCATGTTCCAATCTGGGGAGCTGTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCTAATGAATGGGTTGTGACTGAAAAACTTGGTGACTCTGTCAACAATAATAATAAGAATAAATCAGGAGATGCTGCCAAGAAGAATAATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATGCTATGATTATGTTCATGGGAAACACAACTACTTCATCTATCTCTTCCTTCAGACCTTAACATTCTCAATTGTAGGATTTGGCTACGTTGGCACCATCGTGTAA
Predicted protein sequences of Glyma.12g084600
>Glyma.12g084600.1.p sequence-type=predicted peptide transcript=Glyma.12g084600.1 locus=Glyma.12g084600 ID=Glyma.12g084600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVESQPKFFIPDSINGVNFDVAAQIKMVWEVIKAPLIVPLLNLAVYISLAMALMLFMERVYMGIVIILVKLFWKKPHQRYKFEPLQDDEELGNSNYPVVLVQIPMFNEKEVYKVSIGAACNLSWPVDRLVIQVLDDSTDPTIKQMVEMECNRWASKGINIVYQIRETRGGYKAGALKEGLKRNYVKHCEYVAIFDADFRPEPDFLRRSIPFLVGNPDIALVQARWRFVNSDECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVIPLTILVPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVNNNNKNKSGDAAKKNNAIKATPKKTRSKFVERLNLLELGFAVFLFVCGCYDYVHGKHNYFIYLFLQTLTFSIVGFGYVGTIV*






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