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Report for Sequence Feature Glyma.12g084500

Feature Type:gene_model
Chromosome:Gm12
Start:6789484
stop:6793624
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g084500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08230.2AT Transmembrane amino acid transporter family protein JGI N/AIEA
GO:0003333GO-bp amino acid transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015171GO-mf amino acid transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1303 KOG Amino acid transporters JGI N/AIEA
PTHR22950Panther AMINO ACID TRANSPORTER JGI N/AIEA
PF01490PFAM Transmembrane amino acid transporter protein JGI N/AIEA

Expression Patterns of Glyma.12g084500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g084500
ParalogEvidenceComments
Glyma.11g189700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g084500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g08980 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g084500
>Glyma.12g084500.2 sequence-type=transcript locus=Glyma.12g084500 ID=Glyma.12g084500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGCAGGGCCTTGCCTGTATATATTCCTCCTAATTATGCTAATATGAAATTTGGACAGTGAGGCCATTTTGGTCATGGTGTGATCATTTTCTCTGCTCTTATTCTTAATGAGGCTTATATCCAAGTTTGGCCGGTTGCATATTGCACAAGGCGTCTATAAAAGTAACATCACTGAAATCATTGTCAAATTGACACTGCTTTTCTCTAAAAGGACTTCAAAGTTCTGTTAGATATACAGTGTTATTCTGCTTTCGATCGCTCTATTATTCATTTGCTAAGACCTTAGAGAAGACAGAGGATGGGTACCCTGCTTCCAGATGAAAAATCAGAGAATCCAAATGCTTTGGAACAACTTCAACACCAAAAAGATGTGGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGGGATCTTAAGCTTAGTGATTGGAGCTTTGGTCACTTTCTATTCATACAATTTAATATCTAGGGTTCTTGAACACCACGCTCAGATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAACGGGACCATGAAGCTTTACGAGTTTGTAATTATATTTGGATGCTTCATGCTGATTTTGGCTCAAATCCCATCTTTCCACTCTTTGAGGCACATTAATCTAGTGTCCTTGGTTCTGTGCTTAGCCTATAGTGCCGGTGCTACTATTGGTTCCATTTACATTGGAGACTCATCAAAAGGACCAGAAAAGGATTATTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGTTTATTTGCAACCAACAAATGAAGTGCTAGAGCAAACATTTGGAGACCCAAAAAGCCCCGAGTTCTCCAAACGCAATGTAATCCCTAGAGTGATATCTCGGTCATTAGCTATTGCTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGCCCTGTTTTCTGGTTGAATGTGATAATTGTTGTGGCTTTCTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGGCAGATAGTTCTTGATGCTAAAAATTACCAATTATTTGCTAATGTATGATCATGTTGGACCATCCAATGAAGTTTTGTTGTTCTATGTATCATGGTTCATACTCTAGTAGTTTAAAACCAATCATTGAGTTATTTCAATTAATATAATTATATAAAGACTATTGCAGAACG
Coding sequences of Glyma.12g084500
>Glyma.12g084500.1 sequence-type=CDS polypeptide=Glyma.12g084500.1.p locus=Glyma.12g084500 ID=Glyma.12g084500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTACCCTGCTTCCAGATGAAAAATCAGAGAATCCAAATGCTTTGGAACAACTTCAACACCAAAAAGATGTGGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGGGATCTTAAGCTTAGTGATTGGAGCTTTGGTCACTTTCTATTCATACAATTTAATATCTAGGGTTCTTGAACACCACGCTCAGATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAACGGGACCATGAAGCTTTACGAGTTTGTAATTATATTTGGATGCTTCATGCTGATTTTGGCTCAAATCCCATCTTTCCACTCTTTGAGGCACATTAATCTAGTGTCCTTGGTTCTGTGCTTAGCCTATAGTGCCGGTGCTACTATTGGTTCCATTTACATTGGAGACTCATCAAAAGGACCAGAAAAGGATTATTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGCAACATTAGCACCACCCGTAAAAGGGAAGATGCTCAAGGGACTATGTGTTTGTTATCTTGTTCTTATAGTTACCTTCTTTAGTGTATCTGTATCCGGTTATTGGGCATTTGGTAATGAATCAGAAGGCCTCATCTTAAGCAACTTCGTGGACAATGGGAAGCCTCTGGTGCCCAAGTGGTTCATTTACATGACCAACATTTTCACTATAACACAATTATCTGCGGTTGGTGTGGTTTATTTGCAACCAACAAATGAAGTGCTAGAGCAAACATTTGGAGACCCAAAAAGCCCCGAGTTCTCCAAACGCAATGTAATCCCTAGAGTGATATCTCGGTCATTAGCTATTGCTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGCCCTGTTTTCTGGTTGAATGTGATAATTGTTGTGGCTTTCTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGGCAGATAGTTCTTGATGCTAAAAATTACCAATTATTTGCTAATGTATGA

>Glyma.12g084500.2 sequence-type=CDS polypeptide=Glyma.12g084500.2.p locus=Glyma.12g084500 ID=Glyma.12g084500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTACCCTGCTTCCAGATGAAAAATCAGAGAATCCAAATGCTTTGGAACAACTTCAACACCAAAAAGATGTGGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGGGATCTTAAGCTTAGTGATTGGAGCTTTGGTCACTTTCTATTCATACAATTTAATATCTAGGGTTCTTGAACACCACGCTCAGATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAACGGGACCATGAAGCTTTACGAGTTTGTAATTATATTTGGATGCTTCATGCTGATTTTGGCTCAAATCCCATCTTTCCACTCTTTGAGGCACATTAATCTAGTGTCCTTGGTTCTGTGCTTAGCCTATAGTGCCGGTGCTACTATTGGTTCCATTTACATTGGAGACTCATCAAAAGGACCAGAAAAGGATTATTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGTTTATTTGCAACCAACAAATGAAGTGCTAGAGCAAACATTTGGAGACCCAAAAAGCCCCGAGTTCTCCAAACGCAATGTAATCCCTAGAGTGATATCTCGGTCATTAGCTATTGCTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGCCCTGTTTTCTGGTTGAATGTGATAATTGTTGTGGCTTTCTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGGCAGATAGTTCTTGATGCTAAAAATTACCAATTATTTGCTAATGTATGA
Predicted protein sequences of Glyma.12g084500
>Glyma.12g084500.1.p sequence-type=predicted peptide transcript=Glyma.12g084500.1 locus=Glyma.12g084500 ID=Glyma.12g084500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTLLPDEKSENPNALEQLQHQKDVDAGALFVLKSKGSWMHCGYHLTTSIVAPPLLSLPYAFTFLGWTAGILSLVIGALVTFYSYNLISRVLEHHAQMGMRQLRFRDMARDILGPGWGRYFVGPIQFAVCYGAVVACTLLGGQCMKAIYLLSNPNGTMKLYEFVIIFGCFMLILAQIPSFHSLRHINLVSLVLCLAYSAGATIGSIYIGDSSKGPEKDYSLKGDSVNRLFGIFNAIAIIATTYGNGIIPEIQATLAPPVKGKMLKGLCVCYLVLIVTFFSVSVSGYWAFGNESEGLILSNFVDNGKPLVPKWFIYMTNIFTITQLSAVGVVYLQPTNEVLEQTFGDPKSPEFSKRNVIPRVISRSLAIAISTTIAAMLPFFGDINSLIGAFGFIPLDFILPMVFYNLTFKPSKRSPVFWLNVIIVVAFSALGAIAAVAAVRQIVLDAKNYQLFANV*

>Glyma.12g084500.2.p sequence-type=predicted peptide transcript=Glyma.12g084500.2 locus=Glyma.12g084500 ID=Glyma.12g084500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTLLPDEKSENPNALEQLQHQKDVDAGALFVLKSKGSWMHCGYHLTTSIVAPPLLSLPYAFTFLGWTAGILSLVIGALVTFYSYNLISRVLEHHAQMGMRQLRFRDMARDILGPGWGRYFVGPIQFAVCYGAVVACTLLGGQCMKAIYLLSNPNGTMKLYEFVIIFGCFMLILAQIPSFHSLRHINLVSLVLCLAYSAGATIGSIYIGDSSKGPEKDYSLKGDSVNRLFGIFNAIAIIATTYGNGIIPEIQVYLQPTNEVLEQTFGDPKSPEFSKRNVIPRVISRSLAIAISTTIAAMLPFFGDINSLIGAFGFIPLDFILPMVFYNLTFKPSKRSPVFWLNVIIVVAFSALGAIAAVAAVRQIVLDAKNYQLFANV*






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